Mercurial > repos > tduigou > get_db_info

annotate output.json @ 13:5b16f2911491 draft default tip

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planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 23 May 2025 13:47:21 +0000
parents ee28ec28140d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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1 {
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2 "summary": {
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3 "num_errors": 0,
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4 "num_failures": 0,
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5 "num_skips": 0,
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6 "num_tests": 1
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7 },
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8 "tests": [
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9 {
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10 "data": {
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11 "inputs": {
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12 "annotation_columns": "annotation",
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13 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
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14 "fragment_column": "fragment",
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15 "input": {
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16 "id": "3e55d5e4bd660a72",
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17 "src": "hda"
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18 },
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19 "sequence_column": "sequence",
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20 "table": "sample"
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21 },
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22 "job": {
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23 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmpkx9eg1ax/files/b/7/5/dataset_b7584f2c-5438-48d4-823c-b2c3f4274df3.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'",
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24 "command_version": null,
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25 "copied_from_job_id": null,
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26 "create_time": "2025-05-23T13:46:12.315974",
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27 "dependencies": [],
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28 "exit_code": 0,
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29 "external_id": "224853",
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30 "galaxy_version": "24.2",
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31 "handler": null,
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32 "history_id": "3e55d5e4bd660a72",
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33 "id": "024baef40a002eb4",
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34 "inputs": {
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35 "input": {
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36 "id": "3e55d5e4bd660a72",
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37 "src": "hda",
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38 "uuid": "b7584f2c-5438-48d4-823c-b2c3f4274df3"
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39 }
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40 },
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41 "job_messages": [],
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42 "job_metrics": [],
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43 "job_runner_name": null,
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44 "job_stderr": "",
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45 "job_stdout": "",
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46 "model_class": "Job",
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47 "output_collections": {
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48 "output_gb": {
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49 "id": "3e55d5e4bd660a72",
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50 "src": "hdca"
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51 }
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52 },
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53 "outputs": {
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54 "__new_primary_file_output_gb|part_A__": {
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55 "id": "024baef40a002eb4",
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56 "src": "hda",
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57 "uuid": "93fbeb5d-074d-48e6-9eec-fd7445ec81dd"
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58 },
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59 "__new_primary_file_output_gb|part_B__": {
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60 "id": "26cae1ed3aa61beb",
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61 "src": "hda",
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62 "uuid": "d9595d0c-e479-4529-8c8f-92910ba304e2"
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63 },
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64 "__new_primary_file_output_gb|part_C__": {
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65 "id": "63a16c870de58b5c",
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66 "src": "hda",
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67 "uuid": "f7f751b7-bc0a-496e-999f-a1eaded9db2c"
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68 },
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69 "__new_primary_file_output_gb|part_D__": {
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70 "id": "d5938cf81457dc9d",
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71 "src": "hda",
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72 "uuid": "cc77f187-47d8-495e-b951-70ade982ca17"
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73 },
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74 "__new_primary_file_output_gb|part_E__": {
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75 "id": "a522ff593fd68eb0",
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76 "src": "hda",
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77 "uuid": "42671fc1-73de-4a25-b090-242c9c233349"
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78 },
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79 "__new_primary_file_output_gb|part_F__": {
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80 "id": "4790cce11de15e49",
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81 "src": "hda",
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82 "uuid": "28fa25eb-6a6f-422b-b18f-cc27335d0057"
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83 },
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84 "__new_primary_file_output_gb|part_G__": {
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85 "id": "fd0d5f6f6b618b2e",
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86 "src": "hda",
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87 "uuid": "2f9a4438-cc15-4157-8d4e-76e265f001e5"
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88 },
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89 "__new_primary_file_output_gb|part_H__": {
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90 "id": "55923ec0abca33c6",
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91 "src": "hda",
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92 "uuid": "ec95f6c6-83ce-4908-a438-4b75b70f300b"
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93 },
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94 "__new_primary_file_output_gb|part_I__": {
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95 "id": "a7c1ac8dd0e0cd88",
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96 "src": "hda",
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97 "uuid": "ae511dd8-952c-4402-9520-d158966dd7f2"
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98 },
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99 "__new_primary_file_output_gb|part_J__": {
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100 "id": "03ce4e2872cac014",
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101 "src": "hda",
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102 "uuid": "143078c2-aa8d-4f30-858a-dcc96d854582"
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103 },
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104 "__new_primary_file_output_gb|part_K__": {
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105 "id": "7036040c587c5933",
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106 "src": "hda",
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107 "uuid": "6287af7a-a2ad-4348-a4d8-9bc78969a188"
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108 },
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109 "__new_primary_file_output_gb|part_L__": {
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110 "id": "bf44ed04fc51b238",
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111 "src": "hda",
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112 "uuid": "a32e4a55-fb89-434c-a222-506576b7fc34"
6
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113 }
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114 },
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115 "params": {
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116 "__input_ext": "\"input\"",
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117 "annotation_columns": "\"annotation\"",
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118 "chromInfo": "\"/tmp/tmpkx9eg1ax/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
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119 "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"",
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120 "dbkey": "\"?\"",
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121 "fragment_column": "\"fragment\"",
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122 "sequence_column": "\"sequence\"",
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123 "table": "\"sample\""
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124 },
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125 "state": "ok",
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126 "stderr": "",
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127 "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
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128 "tool_id": "get_DB_data",
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129 "tool_stderr": "",
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130 "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
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131 "update_time": "2025-05-23T13:46:18.962770",
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132 "user_email": "planemo@galaxyproject.org",
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133 "user_id": "3e55d5e4bd660a72"
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134 },
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135 "status": "success",
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136 "test_index": 0,
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137 "time_seconds": 16.930965185165405,
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138 "tool_id": "get_DB_data",
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139 "tool_version": "0.1.0+galaxy0"
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140 },
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141 "has_data": true,
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142 "id": "get_DB_data-0"
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143 }
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144 ],
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145 "version": "0.1"
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146 }