Mercurial > repos > tduigou > get_db_info

annotate output.json @ 6:56a0938d534d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 18 Apr 2025 12:52:49 +0000
parents
children 6401a277ee72
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
1 {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
2 "summary": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
3 "num_errors": 0,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
4 "num_failures": 0,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
5 "num_skips": 0,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
6 "num_tests": 1
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
7 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
8 "tests": [
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
9 {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
10 "data": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
11 "inputs": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
12 "annotation_columns": "annotation",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
13 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
14 "fragment_column": "fragment",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
15 "input": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
16 "id": "706ba6c84a03098c",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
17 "src": "hda"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
18 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
19 "sequence_column": "sequence",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
20 "table": "sample"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
21 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
22 "job": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
23 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmp42w72yto/files/3/6/2/dataset_3622642b-aec9-4602-bb27-170ce5daff6d.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
24 "command_version": null,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
25 "copied_from_job_id": null,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
26 "create_time": "2025-04-18T12:52:15.493942",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
27 "dependencies": [],
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
28 "exit_code": 0,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
29 "external_id": "157761",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
30 "galaxy_version": "24.2",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
31 "handler": null,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
32 "history_id": "706ba6c84a03098c",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
33 "id": "cc02f40f5df38cc6",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
34 "inputs": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
35 "input": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
36 "id": "706ba6c84a03098c",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
37 "src": "hda",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
38 "uuid": "3622642b-aec9-4602-bb27-170ce5daff6d"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
39 }
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
40 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
41 "job_messages": [],
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
42 "job_metrics": [],
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
43 "job_runner_name": null,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
44 "job_stderr": "",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
45 "job_stdout": "",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
46 "model_class": "Job",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
47 "output_collections": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
48 "output_gb": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
49 "id": "706ba6c84a03098c",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
50 "src": "hdca"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
51 }
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
52 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
53 "outputs": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
54 "__new_primary_file_output_gb|ACP10001AaCbbBS__": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
55 "id": "cc02f40f5df38cc6",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
56 "src": "hda",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
57 "uuid": "808dfb23-fd8a-4bd8-a8b1-c1cb9f569537"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
58 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
59 "__new_primary_file_output_gb|CFP10002AaCbbBS__": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
60 "id": "c817ad70fa00c136",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
61 "src": "hda",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
62 "uuid": "33a35584-db32-4cf5-9f97-29e32956b76a"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
63 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
64 "__new_primary_file_output_gb|QWE10004AaCbbBS__": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
65 "id": "ecde0ca67d20406e",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
66 "src": "hda",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
67 "uuid": "50ef4259-8c5c-48f3-b6d8-77b478bff207"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
68 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
69 "__new_primary_file_output_gb|XYZ10003AaCbbBS__": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
70 "id": "5dd74542a4c0f825",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
71 "src": "hda",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
72 "uuid": "65a4517c-ed95-4894-9846-73d8d8f4b3ec"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
73 }
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
74 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
75 "params": {
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
76 "__input_ext": "\"input\"",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
77 "annotation_columns": "\"annotation\"",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
78 "chromInfo": "\"/tmp/tmp42w72yto/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
79 "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
80 "dbkey": "\"?\"",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
81 "fragment_column": "\"fragment\"",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
82 "sequence_column": "\"sequence\"",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
83 "table": "\"sample\""
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
84 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
85 "state": "ok",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
86 "stderr": "",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
87 "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
88 "tool_id": "get_DB_data",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
89 "tool_stderr": "",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
90 "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
91 "update_time": "2025-04-18T12:52:21.995313",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
92 "user_email": "planemo@galaxyproject.org",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
93 "user_id": "706ba6c84a03098c"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
94 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
95 "status": "success",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
96 "test_index": 0,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
97 "time_seconds": 16.213179349899292,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
98 "tool_id": "get_DB_data",
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
99 "tool_version": "0.1.0+galaxy0"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
100 },
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
101 "has_data": true,
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
102 "id": "get_DB_data-0"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
103 }
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
104 ],
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
105 "version": "0.1"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
tduigou
parents:
diff changeset
106 }