Mercurial > repos > tduigou > get_db_info
view output.json @ 13:5b16f2911491 draft default tip
planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Fri, 23 May 2025 13:47:21 +0000 |
| parents | ee28ec28140d |
| children |
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{ "summary": { "num_errors": 0, "num_failures": 0, "num_skips": 0, "num_tests": 1 }, "tests": [ { "data": { "inputs": { "annotation_columns": "annotation", "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db", "fragment_column": "fragment", "input": { "id": "3e55d5e4bd660a72", "src": "hda" }, "sequence_column": "sequence", "table": "sample" }, "job": { "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmpkx9eg1ax/files/b/7/5/dataset_b7584f2c-5438-48d4-823c-b2c3f4274df3.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'", "command_version": null, "copied_from_job_id": null, "create_time": "2025-05-23T13:46:12.315974", "dependencies": [], "exit_code": 0, "external_id": "224853", "galaxy_version": "24.2", "handler": null, "history_id": "3e55d5e4bd660a72", "id": "024baef40a002eb4", "inputs": { "input": { "id": "3e55d5e4bd660a72", "src": "hda", "uuid": "b7584f2c-5438-48d4-823c-b2c3f4274df3" } }, "job_messages": [], "job_metrics": [], "job_runner_name": null, "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_collections": { "output_gb": { "id": "3e55d5e4bd660a72", "src": "hdca" } }, "outputs": { "__new_primary_file_output_gb|part_A__": { "id": "024baef40a002eb4", "src": "hda", "uuid": "93fbeb5d-074d-48e6-9eec-fd7445ec81dd" }, "__new_primary_file_output_gb|part_B__": { "id": "26cae1ed3aa61beb", "src": "hda", "uuid": "d9595d0c-e479-4529-8c8f-92910ba304e2" }, "__new_primary_file_output_gb|part_C__": { "id": "63a16c870de58b5c", "src": "hda", "uuid": "f7f751b7-bc0a-496e-999f-a1eaded9db2c" }, "__new_primary_file_output_gb|part_D__": { "id": "d5938cf81457dc9d", "src": "hda", "uuid": "cc77f187-47d8-495e-b951-70ade982ca17" }, "__new_primary_file_output_gb|part_E__": { "id": "a522ff593fd68eb0", "src": "hda", "uuid": "42671fc1-73de-4a25-b090-242c9c233349" }, "__new_primary_file_output_gb|part_F__": { "id": "4790cce11de15e49", "src": "hda", "uuid": "28fa25eb-6a6f-422b-b18f-cc27335d0057" }, "__new_primary_file_output_gb|part_G__": { "id": "fd0d5f6f6b618b2e", "src": "hda", "uuid": "2f9a4438-cc15-4157-8d4e-76e265f001e5" }, "__new_primary_file_output_gb|part_H__": { "id": "55923ec0abca33c6", "src": "hda", "uuid": "ec95f6c6-83ce-4908-a438-4b75b70f300b" }, "__new_primary_file_output_gb|part_I__": { "id": "a7c1ac8dd0e0cd88", "src": "hda", "uuid": "ae511dd8-952c-4402-9520-d158966dd7f2" }, "__new_primary_file_output_gb|part_J__": { "id": "03ce4e2872cac014", "src": "hda", "uuid": "143078c2-aa8d-4f30-858a-dcc96d854582" }, "__new_primary_file_output_gb|part_K__": { "id": "7036040c587c5933", "src": "hda", "uuid": "6287af7a-a2ad-4348-a4d8-9bc78969a188" }, "__new_primary_file_output_gb|part_L__": { "id": "bf44ed04fc51b238", "src": "hda", "uuid": "a32e4a55-fb89-434c-a222-506576b7fc34" } }, "params": { "__input_ext": "\"input\"", "annotation_columns": "\"annotation\"", "chromInfo": "\"/tmp/tmpkx9eg1ax/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"", "dbkey": "\"?\"", "fragment_column": "\"fragment\"", "sequence_column": "\"sequence\"", "table": "\"sample\"" }, "state": "ok", "stderr": "", "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n", "tool_id": "get_DB_data", "tool_stderr": "", "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n", "update_time": "2025-05-23T13:46:18.962770", "user_email": "planemo@galaxyproject.org", "user_id": "3e55d5e4bd660a72" }, "status": "success", "test_index": 0, "time_seconds": 16.930965185165405, "tool_id": "get_DB_data", "tool_version": "0.1.0+galaxy0" }, "has_data": true, "id": "get_DB_data-0" } ], "version": "0.1" }
