view output.json @ 13:5b16f2911491 draft default tip

planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 23 May 2025 13:47:21 +0000
parents ee28ec28140d
children
line wrap: on
line source

{
    "summary": {
        "num_errors": 0,
        "num_failures": 0,
        "num_skips": 0,
        "num_tests": 1
    },
    "tests": [
        {
            "data": {
                "inputs": {
                    "annotation_columns": "annotation",
                    "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
                    "fragment_column": "fragment",
                    "input": {
                        "id": "3e55d5e4bd660a72",
                        "src": "hda"
                    },
                    "sequence_column": "sequence",
                    "table": "sample"
                },
                "job": {
                    "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmpkx9eg1ax/files/b/7/5/dataset_b7584f2c-5438-48d4-823c-b2c3f4274df3.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'",
                    "command_version": null,
                    "copied_from_job_id": null,
                    "create_time": "2025-05-23T13:46:12.315974",
                    "dependencies": [],
                    "exit_code": 0,
                    "external_id": "224853",
                    "galaxy_version": "24.2",
                    "handler": null,
                    "history_id": "3e55d5e4bd660a72",
                    "id": "024baef40a002eb4",
                    "inputs": {
                        "input": {
                            "id": "3e55d5e4bd660a72",
                            "src": "hda",
                            "uuid": "b7584f2c-5438-48d4-823c-b2c3f4274df3"
                        }
                    },
                    "job_messages": [],
                    "job_metrics": [],
                    "job_runner_name": null,
                    "job_stderr": "",
                    "job_stdout": "",
                    "model_class": "Job",
                    "output_collections": {
                        "output_gb": {
                            "id": "3e55d5e4bd660a72",
                            "src": "hdca"
                        }
                    },
                    "outputs": {
                        "__new_primary_file_output_gb|part_A__": {
                            "id": "024baef40a002eb4",
                            "src": "hda",
                            "uuid": "93fbeb5d-074d-48e6-9eec-fd7445ec81dd"
                        },
                        "__new_primary_file_output_gb|part_B__": {
                            "id": "26cae1ed3aa61beb",
                            "src": "hda",
                            "uuid": "d9595d0c-e479-4529-8c8f-92910ba304e2"
                        },
                        "__new_primary_file_output_gb|part_C__": {
                            "id": "63a16c870de58b5c",
                            "src": "hda",
                            "uuid": "f7f751b7-bc0a-496e-999f-a1eaded9db2c"
                        },
                        "__new_primary_file_output_gb|part_D__": {
                            "id": "d5938cf81457dc9d",
                            "src": "hda",
                            "uuid": "cc77f187-47d8-495e-b951-70ade982ca17"
                        },
                        "__new_primary_file_output_gb|part_E__": {
                            "id": "a522ff593fd68eb0",
                            "src": "hda",
                            "uuid": "42671fc1-73de-4a25-b090-242c9c233349"
                        },
                        "__new_primary_file_output_gb|part_F__": {
                            "id": "4790cce11de15e49",
                            "src": "hda",
                            "uuid": "28fa25eb-6a6f-422b-b18f-cc27335d0057"
                        },
                        "__new_primary_file_output_gb|part_G__": {
                            "id": "fd0d5f6f6b618b2e",
                            "src": "hda",
                            "uuid": "2f9a4438-cc15-4157-8d4e-76e265f001e5"
                        },
                        "__new_primary_file_output_gb|part_H__": {
                            "id": "55923ec0abca33c6",
                            "src": "hda",
                            "uuid": "ec95f6c6-83ce-4908-a438-4b75b70f300b"
                        },
                        "__new_primary_file_output_gb|part_I__": {
                            "id": "a7c1ac8dd0e0cd88",
                            "src": "hda",
                            "uuid": "ae511dd8-952c-4402-9520-d158966dd7f2"
                        },
                        "__new_primary_file_output_gb|part_J__": {
                            "id": "03ce4e2872cac014",
                            "src": "hda",
                            "uuid": "143078c2-aa8d-4f30-858a-dcc96d854582"
                        },
                        "__new_primary_file_output_gb|part_K__": {
                            "id": "7036040c587c5933",
                            "src": "hda",
                            "uuid": "6287af7a-a2ad-4348-a4d8-9bc78969a188"
                        },
                        "__new_primary_file_output_gb|part_L__": {
                            "id": "bf44ed04fc51b238",
                            "src": "hda",
                            "uuid": "a32e4a55-fb89-434c-a222-506576b7fc34"
                        }
                    },
                    "params": {
                        "__input_ext": "\"input\"",
                        "annotation_columns": "\"annotation\"",
                        "chromInfo": "\"/tmp/tmpkx9eg1ax/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
                        "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"",
                        "dbkey": "\"?\"",
                        "fragment_column": "\"fragment\"",
                        "sequence_column": "\"sequence\"",
                        "table": "\"sample\""
                    },
                    "state": "ok",
                    "stderr": "",
                    "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
                    "tool_id": "get_DB_data",
                    "tool_stderr": "",
                    "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
                    "update_time": "2025-05-23T13:46:18.962770",
                    "user_email": "planemo@galaxyproject.org",
                    "user_id": "3e55d5e4bd660a72"
                },
                "status": "success",
                "test_index": 0,
                "time_seconds": 16.930965185165405,
                "tool_id": "get_DB_data",
                "tool_version": "0.1.0+galaxy0"
            },
            "has_data": true,
            "id": "get_DB_data-0"
        }
    ],
    "version": "0.1"
}