Mercurial > repos > tduigou > get_db_info
diff output.json @ 12:ee28ec28140d draft
planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Fri, 23 May 2025 12:45:20 +0000 |
| parents | 703fda6c48c5 |
| children | 5b16f2911491 |
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--- a/output.json Fri May 23 08:42:42 2025 +0000 +++ b/output.json Fri May 23 12:45:20 2025 +0000 @@ -13,29 +13,29 @@ "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db", "fragment_column": "fragment", "input": { - "id": "90b6134c741d62e0", + "id": "21ac64467e79a23d", "src": "hda" }, "sequence_column": "sequence", "table": "sample" }, "job": { - "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmp6mvmd3i_/files/3/f/a/dataset_3faaa90a-210e-4eac-9baf-365d47e308f7.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'", + "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmp20abmio8/files/0/0/5/dataset_00567b2f-5032-43b8-a612-c16e8ac097ca.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'", "command_version": null, "copied_from_job_id": null, - "create_time": "2025-05-23T08:38:59.358545", + "create_time": "2025-05-23T12:44:22.666476", "dependencies": [], "exit_code": 0, - "external_id": "48209", + "external_id": "196443", "galaxy_version": "24.2", "handler": null, - "history_id": "90b6134c741d62e0", - "id": "b9f952b979e68c98", + "history_id": "21ac64467e79a23d", + "id": "16392a867bb52b96", "inputs": { "input": { - "id": "90b6134c741d62e0", + "id": "21ac64467e79a23d", "src": "hda", - "uuid": "3faaa90a-210e-4eac-9baf-365d47e308f7" + "uuid": "00567b2f-5032-43b8-a612-c16e8ac097ca" } }, "job_messages": [], @@ -46,36 +46,36 @@ "model_class": "Job", "output_collections": { "output_gb": { - "id": "90b6134c741d62e0", + "id": "21ac64467e79a23d", "src": "hdca" } }, "outputs": { "__new_primary_file_output_gb|ACP10001AaCbbBS__": { - "id": "b9f952b979e68c98", + "id": "16392a867bb52b96", "src": "hda", - "uuid": "82bc78d2-10ad-456b-ae64-d9d1e5353fb3" + "uuid": "f6166465-8329-42d3-8b8d-634164cb00d1" }, "__new_primary_file_output_gb|CFP10002AaCbbBS__": { - "id": "4f0ddeb41bc45379", + "id": "f19b79cec441f6c0", "src": "hda", - "uuid": "01046314-2bc0-4f3d-afc7-78fb95d1dc1e" + "uuid": "27c7fa5e-029c-4c52-bfb8-281bc4fd581b" }, "__new_primary_file_output_gb|QWE10004AaCbbBS__": { - "id": "e74e23abb5f774f5", + "id": "c5caf62a8c51ce22", "src": "hda", - "uuid": "1fd729c7-47c7-4f8c-9a84-59a3999f8f59" + "uuid": "79161280-74b3-4786-9d94-d5e616a85047" }, "__new_primary_file_output_gb|XYZ10003AaCbbBS__": { - "id": "19527258361fac16", + "id": "33cdc5f5dcf09503", "src": "hda", - "uuid": "5362e373-68d2-4dd9-88c0-5d37e0a2841a" + "uuid": "3cc67d62-a001-42bf-9628-c508daf0934c" } }, "params": { "__input_ext": "\"input\"", "annotation_columns": "\"annotation\"", - "chromInfo": "\"/tmp/tmp6mvmd3i_/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "chromInfo": "\"/tmp/tmp20abmio8/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"", "dbkey": "\"?\"", "fragment_column": "\"fragment\"", @@ -84,17 +84,17 @@ }, "state": "ok", "stderr": "", - "stdout": "test_fragments_db\nStarting existing container 'test_fragments_db'...\nPostgreSQL Docker container 'test_fragments_db' activated.\nDatabase not ready, retrying...\nConnected to database.\n", + "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n", "tool_id": "get_DB_data", "tool_stderr": "", - "tool_stdout": "test_fragments_db\nStarting existing container 'test_fragments_db'...\nPostgreSQL Docker container 'test_fragments_db' activated.\nDatabase not ready, retrying...\nConnected to database.\n", - "update_time": "2025-05-23T08:39:08.925010", + "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n", + "update_time": "2025-05-23T12:44:29.552502", "user_email": "planemo@galaxyproject.org", - "user_id": "90b6134c741d62e0" + "user_id": "21ac64467e79a23d" }, "status": "success", "test_index": 0, - "time_seconds": 19.857088088989258, + "time_seconds": 17.09453797340393, "tool_id": "get_DB_data", "tool_version": "0.1.0+galaxy0" },
