diff output.json @ 12:ee28ec28140d draft

planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 23 May 2025 12:45:20 +0000
parents 703fda6c48c5
children 5b16f2911491
line wrap: on
line diff
--- a/output.json	Fri May 23 08:42:42 2025 +0000
+++ b/output.json	Fri May 23 12:45:20 2025 +0000
@@ -13,29 +13,29 @@
                     "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
                     "fragment_column": "fragment",
                     "input": {
-                        "id": "90b6134c741d62e0",
+                        "id": "21ac64467e79a23d",
                         "src": "hda"
                     },
                     "sequence_column": "sequence",
                     "table": "sample"
                 },
                 "job": {
-                    "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmp6mvmd3i_/files/3/f/a/dataset_3faaa90a-210e-4eac-9baf-365d47e308f7.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'",
+                    "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmp20abmio8/files/0/0/5/dataset_00567b2f-5032-43b8-a612-c16e8ac097ca.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'",
                     "command_version": null,
                     "copied_from_job_id": null,
-                    "create_time": "2025-05-23T08:38:59.358545",
+                    "create_time": "2025-05-23T12:44:22.666476",
                     "dependencies": [],
                     "exit_code": 0,
-                    "external_id": "48209",
+                    "external_id": "196443",
                     "galaxy_version": "24.2",
                     "handler": null,
-                    "history_id": "90b6134c741d62e0",
-                    "id": "b9f952b979e68c98",
+                    "history_id": "21ac64467e79a23d",
+                    "id": "16392a867bb52b96",
                     "inputs": {
                         "input": {
-                            "id": "90b6134c741d62e0",
+                            "id": "21ac64467e79a23d",
                             "src": "hda",
-                            "uuid": "3faaa90a-210e-4eac-9baf-365d47e308f7"
+                            "uuid": "00567b2f-5032-43b8-a612-c16e8ac097ca"
                         }
                     },
                     "job_messages": [],
@@ -46,36 +46,36 @@
                     "model_class": "Job",
                     "output_collections": {
                         "output_gb": {
-                            "id": "90b6134c741d62e0",
+                            "id": "21ac64467e79a23d",
                             "src": "hdca"
                         }
                     },
                     "outputs": {
                         "__new_primary_file_output_gb|ACP10001AaCbbBS__": {
-                            "id": "b9f952b979e68c98",
+                            "id": "16392a867bb52b96",
                             "src": "hda",
-                            "uuid": "82bc78d2-10ad-456b-ae64-d9d1e5353fb3"
+                            "uuid": "f6166465-8329-42d3-8b8d-634164cb00d1"
                         },
                         "__new_primary_file_output_gb|CFP10002AaCbbBS__": {
-                            "id": "4f0ddeb41bc45379",
+                            "id": "f19b79cec441f6c0",
                             "src": "hda",
-                            "uuid": "01046314-2bc0-4f3d-afc7-78fb95d1dc1e"
+                            "uuid": "27c7fa5e-029c-4c52-bfb8-281bc4fd581b"
                         },
                         "__new_primary_file_output_gb|QWE10004AaCbbBS__": {
-                            "id": "e74e23abb5f774f5",
+                            "id": "c5caf62a8c51ce22",
                             "src": "hda",
-                            "uuid": "1fd729c7-47c7-4f8c-9a84-59a3999f8f59"
+                            "uuid": "79161280-74b3-4786-9d94-d5e616a85047"
                         },
                         "__new_primary_file_output_gb|XYZ10003AaCbbBS__": {
-                            "id": "19527258361fac16",
+                            "id": "33cdc5f5dcf09503",
                             "src": "hda",
-                            "uuid": "5362e373-68d2-4dd9-88c0-5d37e0a2841a"
+                            "uuid": "3cc67d62-a001-42bf-9628-c508daf0934c"
                         }
                     },
                     "params": {
                         "__input_ext": "\"input\"",
                         "annotation_columns": "\"annotation\"",
-                        "chromInfo": "\"/tmp/tmp6mvmd3i_/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
+                        "chromInfo": "\"/tmp/tmp20abmio8/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
                         "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"",
                         "dbkey": "\"?\"",
                         "fragment_column": "\"fragment\"",
@@ -84,17 +84,17 @@
                     },
                     "state": "ok",
                     "stderr": "",
-                    "stdout": "test_fragments_db\nStarting existing container 'test_fragments_db'...\nPostgreSQL Docker container 'test_fragments_db' activated.\nDatabase not ready, retrying...\nConnected to database.\n",
+                    "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
                     "tool_id": "get_DB_data",
                     "tool_stderr": "",
-                    "tool_stdout": "test_fragments_db\nStarting existing container 'test_fragments_db'...\nPostgreSQL Docker container 'test_fragments_db' activated.\nDatabase not ready, retrying...\nConnected to database.\n",
-                    "update_time": "2025-05-23T08:39:08.925010",
+                    "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
+                    "update_time": "2025-05-23T12:44:29.552502",
                     "user_email": "planemo@galaxyproject.org",
-                    "user_id": "90b6134c741d62e0"
+                    "user_id": "21ac64467e79a23d"
                 },
                 "status": "success",
                 "test_index": 0,
-                "time_seconds": 19.857088088989258,
+                "time_seconds": 17.09453797340393,
                 "tool_id": "get_DB_data",
                 "tool_version": "0.1.0+galaxy0"
             },