Mercurial > repos > tduigou > get_db_info
diff output.json @ 6:56a0938d534d draft
planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Fri, 18 Apr 2025 12:52:49 +0000 |
| parents | |
| children | 6401a277ee72 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/output.json Fri Apr 18 12:52:49 2025 +0000 @@ -0,0 +1,106 @@ +{ + "summary": { + "num_errors": 0, + "num_failures": 0, + "num_skips": 0, + "num_tests": 1 + }, + "tests": [ + { + "data": { + "inputs": { + "annotation_columns": "annotation", + "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db", + "fragment_column": "fragment", + "input": { + "id": "706ba6c84a03098c", + "src": "hda" + }, + "sequence_column": "sequence", + "table": "sample" + }, + "job": { + "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmp42w72yto/files/3/6/2/dataset_3622642b-aec9-4602-bb27-170ce5daff6d.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'", + "command_version": null, + "copied_from_job_id": null, + "create_time": "2025-04-18T12:52:15.493942", + "dependencies": [], + "exit_code": 0, + "external_id": "157761", + "galaxy_version": "24.2", + "handler": null, + "history_id": "706ba6c84a03098c", + "id": "cc02f40f5df38cc6", + "inputs": { + "input": { + "id": "706ba6c84a03098c", + "src": "hda", + "uuid": "3622642b-aec9-4602-bb27-170ce5daff6d" + } + }, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + "output_collections": { + "output_gb": { + "id": "706ba6c84a03098c", + "src": "hdca" + } + }, + "outputs": { + "__new_primary_file_output_gb|ACP10001AaCbbBS__": { + "id": "cc02f40f5df38cc6", + "src": "hda", + "uuid": "808dfb23-fd8a-4bd8-a8b1-c1cb9f569537" + }, + "__new_primary_file_output_gb|CFP10002AaCbbBS__": { + "id": "c817ad70fa00c136", + "src": "hda", + "uuid": "33a35584-db32-4cf5-9f97-29e32956b76a" + }, + "__new_primary_file_output_gb|QWE10004AaCbbBS__": { + "id": "ecde0ca67d20406e", + "src": "hda", + "uuid": "50ef4259-8c5c-48f3-b6d8-77b478bff207" + }, + "__new_primary_file_output_gb|XYZ10003AaCbbBS__": { + "id": "5dd74542a4c0f825", + "src": "hda", + "uuid": "65a4517c-ed95-4894-9846-73d8d8f4b3ec" + } + }, + "params": { + "__input_ext": "\"input\"", + "annotation_columns": "\"annotation\"", + "chromInfo": "\"/tmp/tmp42w72yto/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"", + "dbkey": "\"?\"", + "fragment_column": "\"fragment\"", + "sequence_column": "\"sequence\"", + "table": "\"sample\"" + }, + "state": "ok", + "stderr": "", + "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n", + "tool_id": "get_DB_data", + "tool_stderr": "", + "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n", + "update_time": "2025-04-18T12:52:21.995313", + "user_email": "planemo@galaxyproject.org", + "user_id": "706ba6c84a03098c" + }, + "status": "success", + "test_index": 0, + "time_seconds": 16.213179349899292, + "tool_id": "get_DB_data", + "tool_version": "0.1.0+galaxy0" + }, + "has_data": true, + "id": "get_DB_data-0" + } + ], + "version": "0.1" +} \ No newline at end of file
