diff output.json @ 6:56a0938d534d draft

planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 18 Apr 2025 12:52:49 +0000
parents
children 6401a277ee72
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/output.json	Fri Apr 18 12:52:49 2025 +0000
@@ -0,0 +1,106 @@
+{
+    "summary": {
+        "num_errors": 0,
+        "num_failures": 0,
+        "num_skips": 0,
+        "num_tests": 1
+    },
+    "tests": [
+        {
+            "data": {
+                "inputs": {
+                    "annotation_columns": "annotation",
+                    "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
+                    "fragment_column": "fragment",
+                    "input": {
+                        "id": "706ba6c84a03098c",
+                        "src": "hda"
+                    },
+                    "sequence_column": "sequence",
+                    "table": "sample"
+                },
+                "job": {
+                    "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmp42w72yto/files/3/6/2/dataset_3622642b-aec9-4602-bb27-170ce5daff6d.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'",
+                    "command_version": null,
+                    "copied_from_job_id": null,
+                    "create_time": "2025-04-18T12:52:15.493942",
+                    "dependencies": [],
+                    "exit_code": 0,
+                    "external_id": "157761",
+                    "galaxy_version": "24.2",
+                    "handler": null,
+                    "history_id": "706ba6c84a03098c",
+                    "id": "cc02f40f5df38cc6",
+                    "inputs": {
+                        "input": {
+                            "id": "706ba6c84a03098c",
+                            "src": "hda",
+                            "uuid": "3622642b-aec9-4602-bb27-170ce5daff6d"
+                        }
+                    },
+                    "job_messages": [],
+                    "job_metrics": [],
+                    "job_runner_name": null,
+                    "job_stderr": "",
+                    "job_stdout": "",
+                    "model_class": "Job",
+                    "output_collections": {
+                        "output_gb": {
+                            "id": "706ba6c84a03098c",
+                            "src": "hdca"
+                        }
+                    },
+                    "outputs": {
+                        "__new_primary_file_output_gb|ACP10001AaCbbBS__": {
+                            "id": "cc02f40f5df38cc6",
+                            "src": "hda",
+                            "uuid": "808dfb23-fd8a-4bd8-a8b1-c1cb9f569537"
+                        },
+                        "__new_primary_file_output_gb|CFP10002AaCbbBS__": {
+                            "id": "c817ad70fa00c136",
+                            "src": "hda",
+                            "uuid": "33a35584-db32-4cf5-9f97-29e32956b76a"
+                        },
+                        "__new_primary_file_output_gb|QWE10004AaCbbBS__": {
+                            "id": "ecde0ca67d20406e",
+                            "src": "hda",
+                            "uuid": "50ef4259-8c5c-48f3-b6d8-77b478bff207"
+                        },
+                        "__new_primary_file_output_gb|XYZ10003AaCbbBS__": {
+                            "id": "5dd74542a4c0f825",
+                            "src": "hda",
+                            "uuid": "65a4517c-ed95-4894-9846-73d8d8f4b3ec"
+                        }
+                    },
+                    "params": {
+                        "__input_ext": "\"input\"",
+                        "annotation_columns": "\"annotation\"",
+                        "chromInfo": "\"/tmp/tmp42w72yto/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
+                        "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"",
+                        "dbkey": "\"?\"",
+                        "fragment_column": "\"fragment\"",
+                        "sequence_column": "\"sequence\"",
+                        "table": "\"sample\""
+                    },
+                    "state": "ok",
+                    "stderr": "",
+                    "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
+                    "tool_id": "get_DB_data",
+                    "tool_stderr": "",
+                    "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
+                    "update_time": "2025-04-18T12:52:21.995313",
+                    "user_email": "planemo@galaxyproject.org",
+                    "user_id": "706ba6c84a03098c"
+                },
+                "status": "success",
+                "test_index": 0,
+                "time_seconds": 16.213179349899292,
+                "tool_id": "get_DB_data",
+                "tool_version": "0.1.0+galaxy0"
+            },
+            "has_data": true,
+            "id": "get_DB_data-0"
+        }
+    ],
+    "version": "0.1"
+}
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