Mercurial > repos > tduigou > get_db_info

annotate output.json @ 12:ee28ec28140d draft

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planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 23 May 2025 12:45:20 +0000
parents 703fda6c48c5
children 5b16f2911491
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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1 {
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2 "summary": {
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3 "num_errors": 0,
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4 "num_failures": 0,
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5 "num_skips": 0,
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6 "num_tests": 1
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7 },
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8 "tests": [
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9 {
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10 "data": {
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11 "inputs": {
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12 "annotation_columns": "annotation",
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13 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
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14 "fragment_column": "fragment",
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15 "input": {
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16 "id": "21ac64467e79a23d",
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17 "src": "hda"
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18 },
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19 "sequence_column": "sequence",
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20 "table": "sample"
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21 },
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22 "job": {
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23 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmp20abmio8/files/0/0/5/dataset_00567b2f-5032-43b8-a612-c16e8ac097ca.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'",
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24 "command_version": null,
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25 "copied_from_job_id": null,
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26 "create_time": "2025-05-23T12:44:22.666476",
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27 "dependencies": [],
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28 "exit_code": 0,
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29 "external_id": "196443",
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30 "galaxy_version": "24.2",
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31 "handler": null,
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32 "history_id": "21ac64467e79a23d",
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33 "id": "16392a867bb52b96",
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34 "inputs": {
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35 "input": {
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36 "id": "21ac64467e79a23d",
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37 "src": "hda",
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38 "uuid": "00567b2f-5032-43b8-a612-c16e8ac097ca"
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39 }
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40 },
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41 "job_messages": [],
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42 "job_metrics": [],
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43 "job_runner_name": null,
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44 "job_stderr": "",
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45 "job_stdout": "",
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46 "model_class": "Job",
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47 "output_collections": {
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48 "output_gb": {
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49 "id": "21ac64467e79a23d",
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50 "src": "hdca"
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51 }
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52 },
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53 "outputs": {
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54 "__new_primary_file_output_gb|ACP10001AaCbbBS__": {
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55 "id": "16392a867bb52b96",
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56 "src": "hda",
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57 "uuid": "f6166465-8329-42d3-8b8d-634164cb00d1"
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58 },
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59 "__new_primary_file_output_gb|CFP10002AaCbbBS__": {
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60 "id": "f19b79cec441f6c0",
6
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61 "src": "hda",
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62 "uuid": "27c7fa5e-029c-4c52-bfb8-281bc4fd581b"
6
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63 },
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64 "__new_primary_file_output_gb|QWE10004AaCbbBS__": {
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65 "id": "c5caf62a8c51ce22",
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66 "src": "hda",
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67 "uuid": "79161280-74b3-4786-9d94-d5e616a85047"
6
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68 },
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69 "__new_primary_file_output_gb|XYZ10003AaCbbBS__": {
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70 "id": "33cdc5f5dcf09503",
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71 "src": "hda",
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72 "uuid": "3cc67d62-a001-42bf-9628-c508daf0934c"
6
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73 }
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74 },
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75 "params": {
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76 "__input_ext": "\"input\"",
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77 "annotation_columns": "\"annotation\"",
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78 "chromInfo": "\"/tmp/tmp20abmio8/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
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79 "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"",
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80 "dbkey": "\"?\"",
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81 "fragment_column": "\"fragment\"",
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82 "sequence_column": "\"sequence\"",
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83 "table": "\"sample\""
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84 },
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85 "state": "ok",
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86 "stderr": "",
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87 "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
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88 "tool_id": "get_DB_data",
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89 "tool_stderr": "",
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90 "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
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91 "update_time": "2025-05-23T12:44:29.552502",
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92 "user_email": "planemo@galaxyproject.org",
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93 "user_id": "21ac64467e79a23d"
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94 },
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95 "status": "success",
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96 "test_index": 0,
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97 "time_seconds": 17.09453797340393,
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98 "tool_id": "get_DB_data",
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99 "tool_version": "0.1.0+galaxy0"
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100 },
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101 "has_data": true,
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102 "id": "get_DB_data-0"
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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103 }
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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104 ],
56a0938d534d planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
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105 "version": "0.1"
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106 }