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comparison output.json @ 13:5b16f2911491 draft default tip

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planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 23 May 2025 13:47:21 +0000
parents ee28ec28140d
children
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12:ee28ec28140d 13:5b16f2911491
11 "inputs": { 11 "inputs": {
12 "annotation_columns": "annotation", 12 "annotation_columns": "annotation",
13 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db", 13 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
14 "fragment_column": "fragment", 14 "fragment_column": "fragment",
15 "input": { 15 "input": {
16 "id": "21ac64467e79a23d", 16 "id": "3e55d5e4bd660a72",
17 "src": "hda" 17 "src": "hda"
18 }, 18 },
19 "sequence_column": "sequence", 19 "sequence_column": "sequence",
20 "table": "sample" 20 "table": "sample"
21 }, 21 },
22 "job": { 22 "job": {
23 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmp20abmio8/files/0/0/5/dataset_00567b2f-5032-43b8-a612-c16e8ac097ca.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'", 23 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmpkx9eg1ax/files/b/7/5/dataset_b7584f2c-5438-48d4-823c-b2c3f4274df3.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'",
24 "command_version": null, 24 "command_version": null,
25 "copied_from_job_id": null, 25 "copied_from_job_id": null,
26 "create_time": "2025-05-23T12:44:22.666476", 26 "create_time": "2025-05-23T13:46:12.315974",
27 "dependencies": [], 27 "dependencies": [],
28 "exit_code": 0, 28 "exit_code": 0,
29 "external_id": "196443", 29 "external_id": "224853",
30 "galaxy_version": "24.2", 30 "galaxy_version": "24.2",
31 "handler": null, 31 "handler": null,
32 "history_id": "21ac64467e79a23d", 32 "history_id": "3e55d5e4bd660a72",
33 "id": "16392a867bb52b96", 33 "id": "024baef40a002eb4",
34 "inputs": { 34 "inputs": {
35 "input": { 35 "input": {
36 "id": "21ac64467e79a23d", 36 "id": "3e55d5e4bd660a72",
37 "src": "hda", 37 "src": "hda",
38 "uuid": "00567b2f-5032-43b8-a612-c16e8ac097ca" 38 "uuid": "b7584f2c-5438-48d4-823c-b2c3f4274df3"
39 } 39 }
40 }, 40 },
41 "job_messages": [], 41 "job_messages": [],
42 "job_metrics": [], 42 "job_metrics": [],
43 "job_runner_name": null, 43 "job_runner_name": null,
44 "job_stderr": "", 44 "job_stderr": "",
45 "job_stdout": "", 45 "job_stdout": "",
46 "model_class": "Job", 46 "model_class": "Job",
47 "output_collections": { 47 "output_collections": {
48 "output_gb": { 48 "output_gb": {
49 "id": "21ac64467e79a23d", 49 "id": "3e55d5e4bd660a72",
50 "src": "hdca" 50 "src": "hdca"
51 } 51 }
52 }, 52 },
53 "outputs": { 53 "outputs": {
54 "__new_primary_file_output_gb|ACP10001AaCbbBS__": { 54 "__new_primary_file_output_gb|part_A__": {
55 "id": "16392a867bb52b96", 55 "id": "024baef40a002eb4",
56 "src": "hda", 56 "src": "hda",
57 "uuid": "f6166465-8329-42d3-8b8d-634164cb00d1" 57 "uuid": "93fbeb5d-074d-48e6-9eec-fd7445ec81dd"
58 }, 58 },
59 "__new_primary_file_output_gb|CFP10002AaCbbBS__": { 59 "__new_primary_file_output_gb|part_B__": {
60 "id": "f19b79cec441f6c0", 60 "id": "26cae1ed3aa61beb",
61 "src": "hda", 61 "src": "hda",
62 "uuid": "27c7fa5e-029c-4c52-bfb8-281bc4fd581b" 62 "uuid": "d9595d0c-e479-4529-8c8f-92910ba304e2"
63 }, 63 },
64 "__new_primary_file_output_gb|QWE10004AaCbbBS__": { 64 "__new_primary_file_output_gb|part_C__": {
65 "id": "c5caf62a8c51ce22", 65 "id": "63a16c870de58b5c",
66 "src": "hda", 66 "src": "hda",
67 "uuid": "79161280-74b3-4786-9d94-d5e616a85047" 67 "uuid": "f7f751b7-bc0a-496e-999f-a1eaded9db2c"
68 }, 68 },
69 "__new_primary_file_output_gb|XYZ10003AaCbbBS__": { 69 "__new_primary_file_output_gb|part_D__": {
70 "id": "33cdc5f5dcf09503", 70 "id": "d5938cf81457dc9d",
71 "src": "hda", 71 "src": "hda",
72 "uuid": "3cc67d62-a001-42bf-9628-c508daf0934c" 72 "uuid": "cc77f187-47d8-495e-b951-70ade982ca17"
73 },
74 "__new_primary_file_output_gb|part_E__": {
75 "id": "a522ff593fd68eb0",
76 "src": "hda",
77 "uuid": "42671fc1-73de-4a25-b090-242c9c233349"
78 },
79 "__new_primary_file_output_gb|part_F__": {
80 "id": "4790cce11de15e49",
81 "src": "hda",
82 "uuid": "28fa25eb-6a6f-422b-b18f-cc27335d0057"
83 },
84 "__new_primary_file_output_gb|part_G__": {
85 "id": "fd0d5f6f6b618b2e",
86 "src": "hda",
87 "uuid": "2f9a4438-cc15-4157-8d4e-76e265f001e5"
88 },
89 "__new_primary_file_output_gb|part_H__": {
90 "id": "55923ec0abca33c6",
91 "src": "hda",
92 "uuid": "ec95f6c6-83ce-4908-a438-4b75b70f300b"
93 },
94 "__new_primary_file_output_gb|part_I__": {
95 "id": "a7c1ac8dd0e0cd88",
96 "src": "hda",
97 "uuid": "ae511dd8-952c-4402-9520-d158966dd7f2"
98 },
99 "__new_primary_file_output_gb|part_J__": {
100 "id": "03ce4e2872cac014",
101 "src": "hda",
102 "uuid": "143078c2-aa8d-4f30-858a-dcc96d854582"
103 },
104 "__new_primary_file_output_gb|part_K__": {
105 "id": "7036040c587c5933",
106 "src": "hda",
107 "uuid": "6287af7a-a2ad-4348-a4d8-9bc78969a188"
108 },
109 "__new_primary_file_output_gb|part_L__": {
110 "id": "bf44ed04fc51b238",
111 "src": "hda",
112 "uuid": "a32e4a55-fb89-434c-a222-506576b7fc34"
73 } 113 }
74 }, 114 },
75 "params": { 115 "params": {
76 "__input_ext": "\"input\"", 116 "__input_ext": "\"input\"",
77 "annotation_columns": "\"annotation\"", 117 "annotation_columns": "\"annotation\"",
78 "chromInfo": "\"/tmp/tmp20abmio8/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", 118 "chromInfo": "\"/tmp/tmpkx9eg1ax/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
79 "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"", 119 "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"",
80 "dbkey": "\"?\"", 120 "dbkey": "\"?\"",
81 "fragment_column": "\"fragment\"", 121 "fragment_column": "\"fragment\"",
82 "sequence_column": "\"sequence\"", 122 "sequence_column": "\"sequence\"",
83 "table": "\"sample\"" 123 "table": "\"sample\""
86 "stderr": "", 126 "stderr": "",
87 "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n", 127 "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
88 "tool_id": "get_DB_data", 128 "tool_id": "get_DB_data",
89 "tool_stderr": "", 129 "tool_stderr": "",
90 "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n", 130 "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n",
91 "update_time": "2025-05-23T12:44:29.552502", 131 "update_time": "2025-05-23T13:46:18.962770",
92 "user_email": "planemo@galaxyproject.org", 132 "user_email": "planemo@galaxyproject.org",
93 "user_id": "21ac64467e79a23d" 133 "user_id": "3e55d5e4bd660a72"
94 }, 134 },
95 "status": "success", 135 "status": "success",
96 "test_index": 0, 136 "test_index": 0,
97 "time_seconds": 17.09453797340393, 137 "time_seconds": 16.930965185165405,
98 "tool_id": "get_DB_data", 138 "tool_id": "get_DB_data",
99 "tool_version": "0.1.0+galaxy0" 139 "tool_version": "0.1.0+galaxy0"
100 }, 140 },
101 "has_data": true, 141 "has_data": true,
102 "id": "get_DB_data-0" 142 "id": "get_DB_data-0"