Mercurial > repos > tduigou > get_db_info
changeset 13:5b16f2911491 draft default tip
planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Fri, 23 May 2025 13:47:21 +0000 |
| parents | ee28ec28140d |
| children | |
| files | get_DB_data.xml get_db_info.py output.html output.json test-data/2-step-golden_gate_plan.csv test-data/test_missing_input.csv testMock.py |
| diffstat | 7 files changed, 1390 insertions(+), 89 deletions(-) [+] |
line wrap: on
line diff
--- a/get_DB_data.xml Fri May 23 12:45:20 2025 +0000 +++ b/get_DB_data.xml Fri May 23 13:47:21 2025 +0000 @@ -37,31 +37,71 @@ <tests> <!--python get_db_info.py -input 'test-data/test_input.csv' -sequence_column 'sequence' -annotation_column 'annotation' -db_uri 'postgresql://postgres:RK17@localhost:5432/test_fragments_db' -table 'sample' -fragment_column 'fragment' -output 'test-data/output'--> <test> - <param name="input" value="test_input.csv" /> + <param name="input" value="2-step-golden_gate_plan.csv" /> <param name="table" value="sample" /> <param name="sequence_column" value="sequence" /> <param name="annotation_columns" value="annotation" /> <param name="fragment_column" value="fragment" /> <param name="db_uri" value="postgresql://postgres:RK17@localhost:5432/test_fragments_db" /> - <output_collection name="output_gb" type="list" count="4"> - <element name="ACP10001AaCbbBS"> + <output_collection name="output_gb" type="list" count="12"> + <element name="part_A"> + <assert_contents> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_B"> <assert_contents> - <has_n_lines min="3" /> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_C"> + <assert_contents> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_D"> + <assert_contents> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_E"> + <assert_contents> + <has_n_lines min="10" /> </assert_contents> </element> - <element name="CFP10002AaCbbBS"> + <element name="part_F"> + <assert_contents> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_G"> <assert_contents> - <has_n_lines min="3" /> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_H"> + <assert_contents> + <has_n_lines min="10" /> </assert_contents> </element> - <element name="QWE10004AaCbbBS"> + <element name="part_I"> <assert_contents> - <has_n_lines min="3" /> + <has_n_lines min="10" /> </assert_contents> </element> - <element name="XYZ10003AaCbbBS"> + <element name="part_J"> + <assert_contents> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_K"> <assert_contents> - <has_n_lines min="3" /> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_L"> + <assert_contents> + <has_n_lines min="10" /> </assert_contents> </element> </output_collection>
--- a/get_db_info.py Fri May 23 12:45:20 2025 +0000 +++ b/get_db_info.py Fri May 23 13:47:21 2025 +0000 @@ -106,17 +106,18 @@ # Compare fragments between CSV and DB csv_fragments = set() - all_ids = set(df[0]) + all_ids = set(df[0].dropna().astype(str)) for _, row in df.iterrows(): for col in df.columns: - if col != 0: # Skip the first column + if col != 0: fragment = row[col] - if fragment not in all_ids: - csv_fragments.add(fragment) + if pd.notna(fragment): + fragment_str = str(fragment) + if fragment_str not in all_ids: + csv_fragments.add(fragment_str) db_fragments = set(fragment_map.keys()) missing_fragments = sorted(list(csv_fragments - db_fragments)) - if missing_fragments: raise ValueError( f" Missing fragments in DB: {', '.join(missing_fragments)}" @@ -128,6 +129,8 @@ for col in df.columns: if col != 0: fragment = row[col] + if fragment not in csv_fragments: + continue db_row = fragment_map.get(fragment) if db_row:
--- a/output.html Fri May 23 12:45:20 2025 +0000 +++ b/output.html Fri May 23 13:47:21 2025 +0000 @@ -285,7 +285,7 @@ var md = window.markdownit({ html: true, }); - target.innerHTML = md.render(atob('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')); + target.innerHTML = md.render(atob('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')); 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--- a/output.json Fri May 23 12:45:20 2025 +0000 +++ b/output.json Fri May 23 13:47:21 2025 +0000 @@ -13,29 +13,29 @@ "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db", "fragment_column": "fragment", "input": { - "id": "21ac64467e79a23d", + "id": "3e55d5e4bd660a72", "src": "hda" }, "sequence_column": "sequence", "table": "sample" }, "job": { - "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmp20abmio8/files/0/0/5/dataset_00567b2f-5032-43b8-a612-c16e8ac097ca.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'", + "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/get_db_data/get_db_info.py' --input '/tmp/tmpkx9eg1ax/files/b/7/5/dataset_b7584f2c-5438-48d4-823c-b2c3f4274df3.dat' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir'", "command_version": null, "copied_from_job_id": null, - "create_time": "2025-05-23T12:44:22.666476", + "create_time": "2025-05-23T13:46:12.315974", "dependencies": [], "exit_code": 0, - "external_id": "196443", + "external_id": "224853", "galaxy_version": "24.2", "handler": null, - "history_id": "21ac64467e79a23d", - "id": "16392a867bb52b96", + "history_id": "3e55d5e4bd660a72", + "id": "024baef40a002eb4", "inputs": { "input": { - "id": "21ac64467e79a23d", + "id": "3e55d5e4bd660a72", "src": "hda", - "uuid": "00567b2f-5032-43b8-a612-c16e8ac097ca" + "uuid": "b7584f2c-5438-48d4-823c-b2c3f4274df3" } }, "job_messages": [], @@ -46,36 +46,76 @@ "model_class": "Job", "output_collections": { "output_gb": { - "id": "21ac64467e79a23d", + "id": "3e55d5e4bd660a72", "src": "hdca" } }, "outputs": { - "__new_primary_file_output_gb|ACP10001AaCbbBS__": { - "id": "16392a867bb52b96", + "__new_primary_file_output_gb|part_A__": { + "id": "024baef40a002eb4", "src": "hda", - "uuid": "f6166465-8329-42d3-8b8d-634164cb00d1" + "uuid": "93fbeb5d-074d-48e6-9eec-fd7445ec81dd" + }, + "__new_primary_file_output_gb|part_B__": { + "id": "26cae1ed3aa61beb", + "src": "hda", + "uuid": "d9595d0c-e479-4529-8c8f-92910ba304e2" + }, + "__new_primary_file_output_gb|part_C__": { + "id": "63a16c870de58b5c", + "src": "hda", + "uuid": "f7f751b7-bc0a-496e-999f-a1eaded9db2c" }, - "__new_primary_file_output_gb|CFP10002AaCbbBS__": { - "id": "f19b79cec441f6c0", + "__new_primary_file_output_gb|part_D__": { + "id": "d5938cf81457dc9d", "src": "hda", - "uuid": "27c7fa5e-029c-4c52-bfb8-281bc4fd581b" + "uuid": "cc77f187-47d8-495e-b951-70ade982ca17" + }, + "__new_primary_file_output_gb|part_E__": { + "id": "a522ff593fd68eb0", + "src": "hda", + "uuid": "42671fc1-73de-4a25-b090-242c9c233349" + }, + "__new_primary_file_output_gb|part_F__": { + "id": "4790cce11de15e49", + "src": "hda", + "uuid": "28fa25eb-6a6f-422b-b18f-cc27335d0057" }, - "__new_primary_file_output_gb|QWE10004AaCbbBS__": { - "id": "c5caf62a8c51ce22", + "__new_primary_file_output_gb|part_G__": { + "id": "fd0d5f6f6b618b2e", "src": "hda", - "uuid": "79161280-74b3-4786-9d94-d5e616a85047" + "uuid": "2f9a4438-cc15-4157-8d4e-76e265f001e5" + }, + "__new_primary_file_output_gb|part_H__": { + "id": "55923ec0abca33c6", + "src": "hda", + "uuid": "ec95f6c6-83ce-4908-a438-4b75b70f300b" + }, + "__new_primary_file_output_gb|part_I__": { + "id": "a7c1ac8dd0e0cd88", + "src": "hda", + "uuid": "ae511dd8-952c-4402-9520-d158966dd7f2" }, - "__new_primary_file_output_gb|XYZ10003AaCbbBS__": { - "id": "33cdc5f5dcf09503", + "__new_primary_file_output_gb|part_J__": { + "id": "03ce4e2872cac014", "src": "hda", - "uuid": "3cc67d62-a001-42bf-9628-c508daf0934c" + "uuid": "143078c2-aa8d-4f30-858a-dcc96d854582" + }, + "__new_primary_file_output_gb|part_K__": { + "id": "7036040c587c5933", + "src": "hda", + "uuid": "6287af7a-a2ad-4348-a4d8-9bc78969a188" + }, + "__new_primary_file_output_gb|part_L__": { + "id": "bf44ed04fc51b238", + "src": "hda", + "uuid": "a32e4a55-fb89-434c-a222-506576b7fc34" } }, "params": { "__input_ext": "\"input\"", "annotation_columns": "\"annotation\"", - "chromInfo": "\"/tmp/tmp20abmio8/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "chromInfo": "\"/tmp/tmpkx9eg1ax/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"", "dbkey": "\"?\"", "fragment_column": "\"fragment\"", @@ -88,13 +128,13 @@ "tool_id": "get_DB_data", "tool_stderr": "", "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\n", - "update_time": "2025-05-23T12:44:29.552502", + "update_time": "2025-05-23T13:46:18.962770", "user_email": "planemo@galaxyproject.org", - "user_id": "21ac64467e79a23d" + "user_id": "3e55d5e4bd660a72" }, "status": "success", "test_index": 0, - "time_seconds": 17.09453797340393, + "time_seconds": 16.930965185165405, "tool_id": "get_DB_data", "tool_version": "0.1.0+galaxy0" },
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2-step-golden_gate_plan.csv Fri May 23 13:47:21 2025 +0000 @@ -0,0 +1,4 @@ +construct_3,construct_1,part_L,part_J,part_K,, +construct_4,construct_2,part_L,part_J,part_K,, +construct_1,part_A,part_B,part_C,part_D,part_E,part_F +construct_2,part_A,part_G,part_H,part_I,part_F,
--- a/test-data/test_missing_input.csv Fri May 23 12:45:20 2025 +0000 +++ b/test-data/test_missing_input.csv Fri May 23 13:47:21 2025 +0000 @@ -1,5 +1,4 @@ -ID,Frag1,Frag2,Frag3 Sample-1,ACP10001AaCbbBS,NEW20001BbDccKT,XYZ10003AaCbbBS Sample-2,CFP10002AaCbbBS,ACP10001AaCbbBS,ALT30005CcEddLM Sample-3,XYZ10003AaCbbBS,ALT30005CcEddLM,ACP10001AaCbbBS -Sample-4,QWE10004AaCbbBS,NEW20001BbDccKT,CFP10002AaCbbBS \ No newline at end of file +Sample-4,QWE10004AaCbbBS,NEW20001BbDccKT,CFP10002AaCbbBS
--- a/testMock.py Fri May 23 12:45:20 2025 +0000 +++ b/testMock.py Fri May 23 13:47:21 2025 +0000 @@ -58,74 +58,1289 @@ VALUES (%s, %s, %s, %s, %s); ''', [ ( - 'ACP10001AaCbbBS', + 'part_A', '''ORIGIN -1 atggccattg taatgggccg ctgaaagggt gcccggatca ctttcgctgt ttcgacgttg -61 gcttggtccc agcggcggca ccgagctggg tagcggtcag gagctgcttc gcgtgagcgg -121 ctgccagggc agctgacgcc gctgcgcgca gctgcgcatg + 1 tcacaggatg gtccaacgaa actaggcttt agacgaggga tgaatgaccg acccccactc + 61 gtggcactaa cggacagact tccctgacgg ttattcgacc attaaagtca gacatgcggg + 121 ggtgaataaa ttagccaaat tgtgtcgaag aaaagacgtg cggctggcac ataaggcagt + 181 cttgatccta gtcttgcagg gatgcacgta agtcgcctca attaactgca gccgagctcc + 241 aggttaccaa agaccctagt atgccagggc ctaacggttg gagtatatta tgggtacgca + 301 atagtgcgga agttaacctg ggcaacatcc aggtgagagg ttggacggaa gcgacagtaa + 361 gtggccatag actgccgagt cgtgttaatg aatcgctata cgcccatgga gttgtggggt + 421 cgttttatcc gagtaggggc ccgctgacta cttcgtccag acaatatgcc gtcttcaata + 481 gtctacctga gagtcatgcc ggcatttccg acgctgagtg aaacccgcgt agccaggcga + 541 aatttgcatc ttgaaatacc actgcagatc agccagtaag gcccatataa gggcgctggt + 601 gttctggcga cagataaagt gttatctaat gtaacccgcg gacttttaga ggatacttga + 661 atgcgggcat atcgtcccac cagcgtcacg tggtcgggct agcggcagac aaactctgcc + 721 gatgtttttc tttgccgcga tagcgggcta gtcaattcac tatccggcga tgaagcatag + 781 attgttatcg cgcttatgcg gaggataatc aagtcttggc agaacctgct cgctcatgca + 841 ctggtgaggc gtggttatcc taacaaccgc ctaggacgaa gaatgggctc ggtagggaca + 901 gttcgtgcgt ttagcttcgt cccatcttaa tgctgtctgg agggaggcta catgcgaaca + 961 gaagccgtgg gcgaaagttg ttgatccggg tctaacacgg ataagggcca tggtgaacgc + 1021 atcatgcgat acttcttggt agttcttcta acatgaccgt gccatagccc ttaccctttg + 1081 aagaagttaa cctatctgcc gtctcctgca cgaatagcga ctggactcgg gtattttgga + 1141 tacctcacga aagcacttcg atcggccgaa gcatggatat ttcgccggac gggcccgaat + 1201 agagagcctt gtatgtcggt tagtacaacg cagtcctgga gacatctacg cggatgggcc + 1261 taggggctgg acttaacatt gggtaacgta cctggtccaa agtgaatgca aagcactttt + 1321 acaaagcgcg ggtccccgtg ggtgtttagg gtagaagatt ggcggatgct acgaacgatc + 1381 ccgctttgaa actatcatta catcgtgtaa aagagacact taacaaaggc caataaactg + 1441 ccagtaagaa tcgctcagtg cggtgctggg gacgctaagt aggggcaaca gccagtgaag + 1501 gacgtgaccg acctttctca gataagatat gctggcgtct atctaataag catagtgaaa + 1561 aaccaaccat ttcacttaca cgaagtacat ttgcattgct agtaaagacg cctaaacaga + 1621 agtgcccttg catgctgtat gtctatagtc cttagggaag catcagccct tctacttatt + 1681 cgaggtctga gaaaccctgg acaagctccg aattattcaa tgtgcctgtc tccgaggtta + 1741 gatagcgcta tgctcttaag agttgcacag aatgaccatc ctggaatgtc cctggagggg + 1801 tctaggtatg ctgatcgaag ggtgctctaa ggacttgacg tgcgtccgag gagggtgctg + 1861 cctccttcgc ctttagatcc aacgcggatc acatgcgcgt gagctaatag gatcaccttc + 1921 tgctccgatt tttaccctcc tgggtcactt ccgaatgagg tagcgggcga aatataatgt + 1981 ctccactcgt aggtgttccc tgtatgtgaa gctctatagt ggacaaaggt ttgatgaact + 2041 agcccccgta tacgctctca ccgacggacg cgggggtctg ttatttgaag catcatacat + 2101 gcgaaggtgc cttctcagca acgaaaggta gtgggagtgt acaagttcaa tgcgccgcca + 2161 taggtctgag tatacaaggg gatgccccca tccacaacgg gattggctac ccggagagct + 2221 ggctccgctc caacaaataa ttatattaac ctattggaat tccacctgca tatcagagga + 2281 gagagacctt tacggctatt ctgtttaccg gatccatcgg taccaaggat cagaaagtga + 2341 cacggtttga acgggttgtt gtaatacttt gagtatacct ctgacgctga gcgtgtcgtc + 2401 ctgagcgcag actcaataac atagcagtcc gacatcgccg tgatatgtaa atgcaacgaa + 2461 tttaggtctt gactcggtct accatgtcaa aagggtagcc agatttcagc gcgaaattga + 2521 actttgtgtt tagtgtgggg tcctcggtta caaaatagga tcagacatgt gtgattttgg + 2581 taacctagtc tggcagtccg acagacttcg ctatgatttg atggggccgg cctataattg + 2641 gcttgcgcaa cccgctcatc tcgggcgtgt tttacttcct gcggtcccca cgccctattt + 2701 tcgggccagc tgtaggtgct agagtgaatg ctggcgaata agattccccg ctatttggcg + 2761 cctcgccaca gctctggcac tatgggggga gtttctctgt tccttaaaca gcacccgttt + 2821 ttgaggtgta ttggtttcgg ttctgcatta ggcaattcgt accgtacaat caattacgac + 2881 acattggcgg cagttatcag ctacccatcg caaagcacac acccacatgt atctattttt + 2941 cgcaaattcc aaaagcttcg attgagattg catcggtagt ccctcagaca tgtcgtaatc + 3001 gaatgcctct tgttccatga gagagagaag tatggcgcga accgctctgc ctttaatttg + 3061 gttctaccat ccacgagttt aaggggcata accctgccca gcactttccg aggctcacgt + 3121 tcatgctacg gtagcacctt tctgcgggtc tcacgctgtc aatatgcagg tgctgcagga + 3181 atttgtctcc aatcgacttg agatatcgca agcatgaaat tatattagac acgccagaga + 3241 acttgggaag cagcactggt agtgatagca acccgagtac agtaacgagt gagcttctga + 3301 tcatgagctc tcctacggcg tcaatgcgac gaatgcccag catgcactct cgctatccat + 3361 gcctgctagg gtggcattat gctcaggaac agttgtagct tggatatcgt ctagatgaaa + 3421 tacctggaca ctggttagcg tcgtcaagca ccaaggacat tcacacgctc gcggtctttc + 3481 gtctccctaa gcgttcggca gtcgggcgtg aagaggttgt aatcagacgg aacaaagcct + 3541 gaaaaaattc cagcgacgta gtattcatga tcctgtacca tctgtagccg ccgcggcgca + 3601 cgattgaatg taggctacta accccatccg tgttagcgat gtgagtttct accgcaacga + 3661 atgctcaagc gaaccttctt ctttcgtccg caacccacaa gccgtggtta tgacagctaa + 3721 attgtcccag acatcccttt attacacaag agctccagcg gaatacctag tcacagcggt + 3781 aatgacacaa agctcttagt tagtccaggg actacttctg tctacagcac atcacactca + 3841 ttatcagcat cagtgtagag acggagaaca tgggctatcc tataccaaga tccgccatct + 3901 aaacatttga agtttcccgt cttctataac ttagcactcg acgctattct gctgagtgcg + 3961 cttagtctgt agcgacttgc gaaatccata aactgagaat tgaaagagag tgcataaccg + 4021 aaacctttgt ggcatatttc cgttgaaacg taccagaaca gccgtttagt gcggaacata + 4081 cagtatcctg ataaagcact caacccaaca gacaccctat gccgatagcg ggatgctaac + 4141 aagtatagtc atgatgattt ctcggacagc ggggtttggt acagctgcaa tccgtgattt + 4201 aaattcggac ctctgcacac accgacggtt acccatatcc tctacggctg taggaagttt + 4261 taccttggat gtcattctga tttcggcgta tc ''', - '''LOCUS ACP10001AaCbbBS 150 bp ds-DNA circular SYN 14-SEP-2017 + '''LOCUS part_A 4292 bp ds-DNA circular UNK 28-OCT-2019 +DEFINITION . +ACCESSION part_A +VERSION part_A +KEYWORDS "creator:SynthSys Center". +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + RBS 2332..2343 + /label="feature" + /ApEinfo_fwdcolor="#ffef86" + misc_feature 2208..2238 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + promoter 2289..2323 + /label="yet another feature" + /ApEinfo_fwdcolor="#85dae9" + misc_feature 3162..3178 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + -35_signal 228..233 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + gene 1009..2028 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + -35_signal 51..56 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + CDS 2350..3027 + /label="another feature" + /ApEinfo_fwdcolor="#ff00ff" + CDS complement(3376..4191) + /label="yet another feature" + /ApEinfo_fwdcolor="#993366" + misc_RNA 87..639 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 2257 + /label="another feature" + /ApEinfo_fwdcolor="#84b0dc" + terminator 3119..3146 + /label="yet another feature" + /ApEinfo_fwdcolor="#c6c9d1" + misc_feature 2053..2100 + /label="feature" + /ApEinfo_fwdcolor="#c6c9d1" + misc_feature 2278..2281 + /label="another feature" + /ApEinfo_fwdcolor="#ff0000" + misc_RNA complement(90..197) + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 726..734 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 2274..2277 + /label="another feature" + /ApEinfo_fwdcolor="#faac61" + rep_origin 51..639 + /label="yet another feature" + /ApEinfo_fwdcolor="#ffef86" + misc_feature 2161..2185 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + -10_signal 206..211 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature complement(3292..3332) + /label="yet another feature" + /ApEinfo_fwdcolor="#c6c9d1" + rep_origin 760..1008 + /label="feature" + /ApEinfo_fwdcolor="#ffef86" + terminator 3032..3103 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + misc_feature 3158..3161 + /label="yet another feature" + /ApEinfo_fwdcolor="#faac61" + misc_feature 3173..3178 + /label="feature" + /ApEinfo_fwdcolor="#84b0dc" + gene complement(3376..4191) + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 2258..2262 + /label="yet another feature" + /ApEinfo_fwdcolor="#84b0dc" + misc_feature 3342..3365 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 3204..3227 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 2256..2273 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + -10_signal 72..77 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 2029..2052 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + CDS 1009..2028 + /label="yet another feature" + /ApEinfo_fwdcolor="#993366" + misc_feature 3237..3265 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 3154..3157 + /label="another feature" + /ApEinfo_fwdcolor="#ff0000" + misc_feature 3180..3290 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 2212..2236 + /label="feature" + /ApEinfo_fwdcolor="#f8d3a9" + misc_feature 1..24 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" +''', + 'Metadata1 for part_A', 'Metadata2 for part_A' + ), + ( + 'part_B', + '''ORIGIN + 1 cgggtctagc cacgcggctg aaaatgcgcc tcaccaagtt cagagagttg taatttaaag + 61 gaccaaagaa cgtccattat gaagacacca atgagaaaag ttcattgcga tcgcagctta + 121 gactgacgtg aagttccaac atttggcata cgtacttgtt aagttcctcc ggctatatgc + 181 gctaggcgca ggtatattag ccggacatct gcaaggttga cgctgaagcc ttatcggtaa + 241 tgcaagcaca acggtattgc agacacacaa taggaagtta tgttaacagg agagggtgat + 301 gccgatgatt acgccccgcg tcgacagtac aataaaacag ctagatcatg tcgaaagtgt + 361 aggcaaaaca ggtaggtgca ggacaggagg gttccctcaa gtcggcttgc tttatgtggc + 421 gaatctgata cccataccgg ctatacatcg gccagggaat atcacagatt ttaaatgagc + 481 ggagatagac ctatgggacc gcatcgatgc aagacatcgc ctacagatac ataatctgga + 541 agacgcagat atcagtacgc tccttcctgg gaggcgtggt ccttggcacc agtcggccac + 601 cccttagcgt ttcacctaag caacgaatcc aggactcctc ttttagcgtt tgggtgtcag + 661 gcgcatcagg agtggttaaa tgaacgctgt acttcgcaag ataattgtga agatctctgc + 721 tattccttaa cattaccacc aactttgcct acatatggcg taatcaaaaa tgcagcgggg + 781 tgctcgatcg tgaaccctca atcacgatgt gctatggcgt agccacacaa catagttccg + 841 gtctggaatt cggtctctgg agagcatacg gtgctctggg ctcacacgta cttcctcttg + 901 tcacgcgcct ttgtagagca ttagggcgga ggtcactggg acggggatca gagagcttaa + 961 aatcccaagt agcagtgcct aaggtgtaga atcttgtgca gatcttcgtc tggcccgaaa + 1021 cctgggcctc cacaacaatg tcgggtcttt tataatttga aaacatcgcg ccttacccgc + 1081 accgcgcagg acgattagac acagggggtc atgtccatgg ttcggggtaa gccaaattta + 1141 catcgagtgt gggcttcatt gaggagaggg cgttacgata cccgttaaat gaaaacccgg + 1201 acagtctcta actgataggc ctgataatcg ccaaatgaag tcgcaattag cagtacatga + 1261 ctggcagata tgtcgccgga gacggtatgg gggacctatc ctaggttggc acgcgagcgc + 1321 gaatgacgcc tatcttatcc ccctgcacgt gatggtatcg tcccaactat cttttacctc + 1381 atcaacgttt tcctgcataa tctgcaagat ggagagtccg cgagtgcggg gagtacgaga + 1441 tcacaaatct gccctgaaga caaagctcgc aggccgtact caggaaatag catcgactca + 1501 cacatatcgg gaacggcaaa gagtgcatcg gccaatgcaa actattgaac gtccatgaaa + 1561 ttgtgtcaaa ctactagtgt gtggacttgc gtcaaggcca tggcgcaata ctcaaagccc + 1621 cggtatttat cccccgcaga gtatccgtgc ggatggagtt ccacagctct ttggacatgc + 1681 aatgcgtggc gctacatgct ccgctgatac agaatatcta atgtctcgcc tcttgccgtc + 1741 gaccctacaa ctactgcacg ggcagagtgg acgcgacccc tgagcggtgc agaaccttag + 1801 tataaggcaa gggtggcacg gccgagccgc acttgctcct actaggccgt gctcgaagct + 1861 attgatgcaa gcacagtatt cccgatttgt aaagcaaggt gcccgtagcc atacacccag + 1921 ctactcaccg gccaatttcg accctctcta tctcagacct ccgcatattc ccaaactcct + 1981 gctcaagtat gaaatgaccg gctcctccta aggcctgcgg acatggagtc atgcgtggaa + 2041 tgccgtgtag gtagggtaca cacagcctta ccatgtaggg caataaatta tagactactg + 2101 acattgattc cttgagggcc cgttcacttg tgggggaacc aggaaggcgc cgatagtcat + 2161 cacttaaaca catgcgacgc atccatttca agaaagacac gctacgggtc tacaccgcct + 2221 atagttctaa tttgggcccc ggtacgcaca tcgatgtact ctccattaca gcatagcaca + 2281 tcagcggccc tagttagcgc ttctttttgt tccaacattc aatagcgggg actgcattat + 2341 cctcacccta tttgttgcat aggtatttgg ccgtatactt gggaaagagc aaccacggga + 2401 gtgcactaga aactgattca cccatgttat aacgcgttgc tcgcaagtcg tactgtggcc + 2461 acgcacaggt caggcaatcg caaccatgtc ttagcagttt gtaagaagac ctttaaacat + 2521 gtacctcaca gcaatctcgg aacttttaat tttcctgagt caatgacatg ctagctccgt + 2581 ccacttgtaa tcaccgtcat aacacagtta gcctgcaaaa gggcgtgtac accttgccac + 2641 tttaaagctg accgaataac ctacctacag gagatgctta gtgccacgga atgatctcgc + 2701 aatgcttagt cttacaccca gtgaatcaac ccaagacctc gccgactgaa cggtattgag + 2761 tccaatcccg agaggcaatt tatggccgtt agtgacagtc ggtcgctgat agaataaggc + 2821 agactcgtct taagcgggct gctttaagag aaaatggagc cctgacgaag aagtggatga + 2881 accaggtttt gacaacgtcc catattggta atgtaggctc gttatcaaga gataggttta + 2941 gaaggctcaa tgctcgacgt aaaagaagtc ttaagctcta tgagccagtg atgagagcta + 3001 attatagggc gcattcgttg gggtaaggtt gcgaattgtc atttaactaa aaccgacggc + 3061 aatgtgagac cctgcagtcc gcctacacct ggctcactga ggcggcaacc gttatcgaag + 3121 cagcatgtat tggtagtacc tgtcgccgat ttccttggga gtgcgctgtt gcgataacgc + 3181 ttatttatgg tttgcgcggg atgtatctaa tgcggccgcc gcccgatcag cctgaacact + 3241 gcggtcatga gccggtccat catgcagttc gcctgtaatt ataacctatt tgttaatggg + 3301 gcttacagag gagcttccaa cgcatctacg agtaacggct gggatcacaa cttagccacc + 3361 ttgtagcagg gacataccgc tttgcgacta ctgcgattct ctaacgagtc ttctgattgg + 3421 tcctatgctc tttcaaaatc tcgataccgt agccaaccct gctgcccacc ttaaactatg + 3481 acaggacaca ccattgtgcc aacctacacc ttaccagtag ttctgctctc caccactaat + 3541 acgatgtcag aggccagaag gagcaccgtc aacaaacgcg ataatcaggg cggcgaagat + 3601 ggaagtagct tgggttgtcg gtgggcaggt caggcgttag tgttatttga ataccaactg + 3661 ttagaccaca gcgactcgaa cagtccgcaa gtcaagtgcg gtcggctttt acaggtggcg + 3721 gattttcatt ccaccattcg ggtctaggtg tggtactaac cgcggtcata cgtggagttg + 3781 aaccgcctga cgcactaagc tatgcgggca acaatatcgc caaagtcatt gtgttgggtt + 3841 ttcacaacag tcacttcgct cacggccgaa ttaaatatct ctaactatta agccattttc + 3901 caaccatcgg ctatcccagc ggttcaatcc gaatcgttac cagtgggtag ctgcagagga + 3961 tcctaagggc gggtcccgct tactgtaact cgtcatgtct cgtggtctac caattcggtt + 4021 agtattcgtg ccatgtatct cataagggtt gcagtttcgt cattgtcgta gttccttaat + 4081 ggactggtac gacccggttg ttatacaacc atcaatcgtt aacggacatt agtgagccga + 4141 ggagaagacc catcagcgga taacccgcca ttatcaccga tactgacata tgagtgccat + 4201 actgggactg gcttcacgtg agggacctca aagtgagtcg tacaaggcag ctcctcaaa +''', + '''LOCUS part_B 4259 bp ds-DNA circular UNK 29-OCT-2019 +DEFINITION . +ACCESSION part_B +VERSION part_B +KEYWORDS "Source" "Sequence" "Freezer" "Shelf" "Box" "Concentration" "Use". +SOURCE . + ORGANISM . + . FEATURES Location/Qualifiers - CDS 5..150 - /vntifkey="1" - /label=mock_gene_A - misc_feature 160..240 - /vntifkey="11" - /label=mock_feature_A + primer_bind 531..550 + /label="feature" + /ApEinfo_fwdcolor="#faac61" + terminator 3078..3135 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + CDS complement(join(4216..4259,1..616)) + /label="yet another feature" + /ApEinfo_fwdcolor="#f58a5e" + exon 2863..3060 + /label="feature" + /ApEinfo_fwdcolor="#75c6a9" + gene 2863..3060 + /label="another feature" + /ApEinfo_fwdcolor="#faac61" + terminator 4101..4195 + /label="yet another feature" + /ApEinfo_fwdcolor="#9eafd2" + primer_bind complement(3410..3429) + /label="feature" + /ApEinfo_fwdcolor="#faac61" + primer_bind 778..796 + /label="another feature" + /ApEinfo_fwdcolor="#75c6a9" + misc_feature 859..862 + /label="yet another feature" + /ApEinfo_fwdcolor="#ffef86" + primer_bind complement(3159..3176) + /label="feature" + /ApEinfo_fwdcolor="#faac61" + misc_feature 863..3060 + /label="another feature" + /ApEinfo_fwdcolor="#f58a5e" + rep_origin complement(3330..3918) + /label="yet another feature" + /ApEinfo_fwdcolor="#84b0dc" + misc_feature 3061..3064 + /label="feature" + /ApEinfo_fwdcolor="#ffef86" + terminator 800..843 + /label="another feature" + /ApEinfo_fwdcolor="#85dae9" +''', + 'Metadata1 for part_B', 'Metadata2 for part_B' + ), + ( + 'part_C', + '''ORIGIN + 1 tggctaggtc tccaatggtt tcaccggagc tgagatcgca ttaaagtcac actacgaatt + 61 atttgtcccc gcggctccag agacaaattt ctaggagtgg gttcatggag aaccgtgaca + 121 agcatggtag cttcaaatag cgtcatcgga tcttaaagtg attgtgacat atatgggatt + 181 gcgcgtctct cttacacaag ctagtgtgcg cgaggtgctg aacacctatt acgtcaactc + 241 ccgggatccc ggcgggttac agagacataa gcagggtgtc catcattaac ttcgatgttg + 301 agcccgtgcc ctgatcaaac acctctcgta gtagtgggtg ccggccgtgt attattttgg + 361 gggagaggat gcgccctaag caatttcttt ccatcggcca gccattcgac gccggcacgc + 421 aagttgttgc gggcactgtt gcagttcccg tactagagtc tcaagtctag aggtaccagc + 481 atcaggaaga tgggtacttc gtgtggatct tctcctgaac ctgaaacctg aagagctaaa + 541 gcgcgtcgcg ctgccatacg ataagtcgct ctcatttccg gaagacgtcg ttgggtgatg + 601 gcgaacaatc gcgaaacgaa aatcgcggtc ggtatgttga ttcaagacgg gctacgggcg + 661 ggttactaac aggtgcgcag aaatgtgatg ggtcacttga ccatgaactt tcgcgccgtc + 721 gcttctgtgg actggccggc tccctgatag tgcactagcc cgttgatatg cccattacca + 781 tttggcggcg cagtgtgcca gcgggattaa gatgcgtggc gtacaactat ccgcactttg + 841 ctgacgcaca aaggcaactg atggacagcc ttcgggcatt cgactggttg gctgagttcg + 901 cctgcctatt aatatgcttg tggaaattga tttacagcgc ctacttctac ttaggtgtac + 961 ctatttacgg cacagggata aaggctgaca gaaaagtcct ggacaggtca taggtagttg + 1021 tcagacctac aatggtataa cttgagagtc ctgtaccgca catgcggttg tagctagatg + 1081 tccagaagac cgtagctagc gacgagtggg ttgcacgcgc attttgggaa ggggctgcgc + 1141 gagggtgggg tcacgggtta ttccatttct aaatgctaaa ccagcagttg ctttagttct + 1201 gacctagcag gcatgtcata tgtatggcta gattattagt acaatgcagg actaagaaag + 1261 cctgagactt aaatgcgttg gtttttcagc cgacgggccg ggagggcaga tggccgaatg + 1321 cgcactgagg agtgcattgc gagggaatag gcggaccacc aggtcccctc acatactgtg + 1381 gataaaccta cccagggaca actcacgcca tcattttcaa gagtagcact actttccact + 1441 aagtacggtt tgtcgagagc cggtggcacc gtgcgacgag cttgtgggca ctaggcgaac + 1501 cgggttatat aggactgcct tgcggtgcgg gaatacttta ccccgtggag aggccataaa + 1561 agcttacatt tattgtagcc gctagcggtt tcgacgcgct caagtggggc tttatcttag + 1621 agtatcaaat aatgccctct cagcttcatc ttgatttttg tgtttggggt agtgtatccg + 1681 atgggtcacc ttcttgacct tggggagctc catccatcgt accaatactc cgtttctttg + 1741 tgttgcctac cgagtaatcg aataccgcac gagggctaga atctaattta aggtgggtct + 1801 tatccctgtt gtttggacct aacgctgtaa caaatcactt ccgcgacggg tgtcattacg + 1861 tcttctatcc gccaccggtt caacagtgcg tcgaatgcca agtccctatt acccgcattg + 1921 taaagccatt acaatacctc cggtgatata attgattgcc ggttggcaag ggatcatctg + 1981 tacgggccgc gattgattgc tgataaggaa cggcggtaag gaacgtatcg cgtacgaggt + 2041 tgtacactgg aaccgctaaa caagcggtat cgctaaatta ccggcgatta tatcaaggga + 2101 atcttaggta gcacgaagcc ctacgccctg gaaacaggat cggcgcgagg ccgtggacat + 2161 attagcctac gtttttttac acccagattt ccgacgatgt ccacagctaa ggctatccta + 2221 aaccgcaaac acatataacc gcagtataaa gcacgggatg attccttggc catcttgcaa + 2281 gcagtgcaag gcaattctgg tgataggggc aaggcagtga accgagtggt cagcgtattg + 2341 tgaccctgca attgtcatgg cagataattg tttatgaacc tgtttcacac acccatccct + 2401 tggatctcca gcgtagttac taatagtacg atttcctggt gttctgtcac ccgccttgct + 2461 gccttcacgc ctgccccacg ttttgctgtc cactgaatat cgctctaatt aataggtgtc + 2521 acactgtatc aggtaagtcc attccgggtg ctattggatc attcctgaga tgtaccaccg + 2581 atcccatagg cgttaggtct tacatctgga gtgaaaaaga tcagcatcga actataggta + 2641 gataaaggtc atgactgtta acagagaatc gttcctatcg caaccttcac taactggaag + 2701 gcacccccac actttgatta gtaagcccct agcgaatgta gtgatccaag aacatcgagt + 2761 atactttagc tctcggttca ggcatgtatg caatcgacca cccttccgtt cagagtactc + 2821 tcaaccagca gatttctaaa ctttatagcc tccgcccact aaaattgcct tatctcaggt + 2881 tgactcttgg atgtagctgt aatctaacat acacatggag ctgcggcaaa ttatcgtacg + 2941 tccaaaccac caccggatca gtggcgatac tattctcgca aaaaagccat ccagcattgg + 3001 aacaagtgtt aaccagcatt tttctgagtc ccccggaaag aaagttgact acactacatc + 3061 cataaatgct agagtgtgga ttcgccatgt gttacaacgg tcaaccgaaa ggttagcatg + 3121 atacttcgtt gttcaatcgg acgttcgagc gccctccctg tttatcactt gatccccctt + 3181 ttgaaacatg tgcgctgcga cgcagggctg ggagagtcac cggaaaccaa aagcccgacc + 3241 tcggacgtgt agggccctcc gtttgccatc aatggcgatg taggattctc ttttaataca + 3301 acgttcactc aattaacgtc ttggtataag cgtcgaacgt gaccgaggtt gacaccagtg + 3361 tcacggctgc gccggggttt gttgctccgc gtgtacaggg tattggttcg tgagacctag + 3421 cca ''', - 'Metadata1 for ACP10001AaCbbBS', 'Metadata2 for ACP10001AaCbbBS' + '''LOCUS part_C 3423 bp ds-DNA linear UNK 20-NOV-2019 +DEFINITION . +ACCESSION part_C +VERSION part_C +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + CDS 18..3275 + /label="feature" + /ApEinfo_fwdcolor="#ffef86" + CDS 3276..3404 + /label="another feature" + /ApEinfo_fwdcolor="#ffef86" + misc_feature 2486 + /label="yet another feature" + /ApEinfo_fwdcolor="#b1ff67" + misc_feature 3411..3423 + /label="feature" + /ApEinfo_fwdcolor="#faac61" + misc_feature 3407..3410 + /label="another feature" + /ApEinfo_fwdcolor="#f8d3a9" + misc_feature 14..17 + /label="yet another feature" + /ApEinfo_fwdcolor="#f8d3a9" + misc_feature 1..13 + /label="feature" + /ApEinfo_fwdcolor="#faac61" + misc_feature 3131 + /label="another feature" + /ApEinfo_fwdcolor="#b1ff67" + misc_feature 2078 + /label="yet another feature" + /ApEinfo_fwdcolor="#b1ff67" + misc_feature 14 + /label="feature" + /ApEinfo_fwdcolor="#b1ff67" +''', + 'Metadata1 for part_C', 'Metadata2 for part_C' + ), + ( + 'part_D', + '''ORIGIN + 1 accctgcagt ccgtgaatta agaccaatcc actggagctc tatacaggac atcagcgatc + 61 ggtcgagtaa aaccgagttt ctggactccc ttagtctgag aattgtacct tattacgaat + 121 ccggaaatga agtgcgctca taaaatcttg atcgctaact gttttccgct ttttgaacct + 181 acagtcagct atttcgccgc aagcgaggtt tatccccttt tgtgtgtgtc agcgggcgaa + 241 cgtggaggac aattatgacg aatgcctaat aaccaacgta ggcttggctg gtgaggacat + 301 tgcccttccc cttctactaa ccagtgttgt tcagatcatg taccaagtgc agtaatgcta + 361 atcccctgaa ttctgacgtt ggatttggag cgtgattggc aattatccgc tgcaaggcgt + 421 agtatcgcta tctgggaaaa cttagggttg caagcaaggt catcgcccgt ctctagatcc + 481 gacgggagcc tcaccctgca tgaggaagtc ctaatccgct ctaaacaaga gctgaacact + 541 ggatgtctcg cagtagattt gctagaatgc aatgctggct cgtgtgcagc ctcaaggtca + 601 ccatgcttcc gttaaattcc acgctctccg agtctgctgg ttcgggataa atctacgtga + 661 cattcgcgag gtcccggcct gtagatcgtc tcggcaggag agaacacggt tgatccccca + 721 cgcggaaccg atagatgcca ggctagatga tgactgaagg tagtttgtac gagtgacctc + 781 tctagccaag tattttcccg tctcttaagt tatagccgct ctcattccgg gttgtgatat + 841 ccttcatatc cactctctgt aaaatgctgg gttgttcttc tctccacggt cagggaatcg + 901 cctcttttcg gataaacgac attatttcgc gccacagaac ggtttggggg tcgaaggacc + 961 ctagactttg ggtatcccac tcttaccgga tggtaccgct atctccccag ggtccatcgg + 1021 aatggctagc cacgttaccc ttatctgtca gtatcagtct cagacttaag tataccacgg + 1081 tagcgacagc tgtcttttaa tggcccgggc agggagccgg gcccaccgtc catggtccac + 1141 tgtaagggta tctgcaacct tcgccgagct tcttccccaa ggaggtagta ccttaccaaa + 1201 cttccgagtc agtatcgtca aaggggcccc tagggctcac accatcgagt ttccgcggct + 1261 taccagtcta gcctgatatg tttcaggtca ggaaataaga ggtatagccc cgtggacacg + 1321 tactgttcga gcggctagat gtaggttgag ttaagtacag tagacgcgtt ggataccgtc + 1381 gaacattact ccgtctgcca agggtagccg agtacttctt ccggctcggc cattccgact + 1441 aagttagttt cgaattgacg tgccaaagcg tggctcccag tcatttgtcc ttaaattaaa + 1501 cataagtttt ttacctgctc gcgtgccggc cgcttgaggg ggcagcaaga agtcggttca + 1561 aatggggtgt taagaccggt gttgcaagcg gaccatccag agttagcgtc ctcgacgaaa + 1621 cgttaacaat cgtgagatta gaggtcgaat atccccttcg tagggggttt tattgtgcaa + 1681 gatgcgcaaa tgaaccccaa ccttgcgggc ctgtagcgaa caggcgaaaa ggtccaatac + 1741 ggcgcccgat gcaccgtaaa acaggtcctc taactgtgtg ttctacgctc tccggatcct + 1801 gtatataaga acgaatcccc ttttcctagg gcccggccgc gtagacccag tacacttgac + 1861 tttcacgaag atccatccta ctcccatacg cttgagagtg ccaacgtagt ttgtaaccga + 1921 ccttgcctcg gctagaaagg cattttgtcg catgtggcca gcctgtcagg gcgtgctcta + 1981 ggcttgacga ttagtgctac gggatgattc gtaaccgagc tgacgggacg cctctggaat + 2041 tcggtctctt tcgatggtgc ctcctctacg tagatctact ggataaccgt ccccaatatc + 2101 cgcttcccaa cgtagattgc cgacaggcat aagcttcggg ggcgcaaagg ccgacgtccg + 2161 cattgcagtg tagctttgtg agcaggaagt gtgatagtct ttcgattatt aaagtctgag + 2221 ctgaatgaaa aaaggtccaa cgaatggagg acgcgaagac atgggtgtct cttatggccc + 2281 gagcgggagt aatggcggtt cgtacataaa ggctgaaagg attctggcgt tagctgtctt + 2341 acgttggatt ggcccttcaa attatcgatg ttagctgatt cggtgtaccg ggcgaggaaa + 2401 gcgctctcag aacaacttca tatacgaggt tcgactataa tggtctaagc tcctgggcta + 2461 gtctcaagaa gcgggtacct ttagtagcac gtatcgacgg caaagcaaag aataaaaact + 2521 tggctttgca tcgtgcaaag atttctaact aggttgttta agggctggta tctatgtccc + 2581 gctataacag cgcgcctaca gtagaagttt aaccatgaca tacctttgaa gtgttcgtat + 2641 cacacacaag gaaggagcat gtggacacca ctgagctttg ag +''', + '''LOCUS part_D 2682 bp ds-DNA circular UNK 30-OCT-2019 +DEFINITION . +ACCESSION part_D +VERSION part_D +KEYWORDS "Source:Subcloned from vector Andrew" "Sequence" "Freezer" "Shelf" + "Box:Mobius box" "Concentration" "Use:Mobius". +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + rep_origin complement(262..850) + /label="feature" + /ApEinfo_fwdcolor="#ffef86" + misc_feature 2642..2671 + /label="another feature" + /ApEinfo_fwdcolor="#b1ff67" + terminator 1991..2034 + /label="yet another feature" + /ApEinfo_fwdcolor="#c6c9d1" + CDS 2054..2566 + /label="feature" + /ApEinfo_fwdcolor="#84b0dc" + misc_feature 1919..1938 + /label="another feature" + /ApEinfo_fwdcolor="#f58a5e" + misc_feature 2050..2053 + /label="yet another feature" + /ApEinfo_fwdcolor="#f8d3a9" + misc_feature 2576..2641 + /label="feature" + /ApEinfo_fwdcolor="#b7e6d7" + terminator 10..67 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + misc_feature 143..162 + /label="yet another feature" + /ApEinfo_fwdcolor="#75c6a9" + misc_feature 2675..2678 + /label="feature" + /ApEinfo_fwdcolor="#f8d3a9" + CDS 2618..2641 + /label="another feature" + /ApEinfo_fwdcolor="#84b0dc" + CDS complement(1148..1807) + /label="yet another feature" + /ApEinfo_fwdcolor="#b7e6d7" + terminator 1033..1127 + /label="feature" + /ApEinfo_fwdcolor="#c6c9d1" +''', + 'Metadata1 for part_D', 'Metadata2 for part_D' + ), + ( + 'part_E', + '''ORIGIN + 1 tggctaggtc tccgctttga tcagcacgcg tctcagagtt tcagggggac ccaaattact + 61 ggtcctcaat tgggacgcga ccgcatctcc ccacgaaagc ttatggggat tgcccactgc + 121 ccagcttcaa atctgaaggt tcggcttatt gacagggtct aacacgcagc tcaactgctc + 181 gaggttagag gcgtaatgac gggccccgat agccttctac gattacgtcc agcaggaacc + 241 ccacagcttt tccctacgtc taacaccgtg aaagcaaaac tgtctgccct tttacatggt + 301 ctttaaggaa tctctgcact tatgttatta ggtatgagac ctagcca +''', + '''LOCUS part_E 347 bp ds-DNA linear UNK 20-OCT-2019 +DEFINITION . +ACCESSION part_E +VERSION part_E +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + 3'UTR 21..330 + /label="feature" + /ApEinfo_fwdcolor="#c6c9d1" + misc_feature 1..13 + /label="another feature" + /ApEinfo_fwdcolor="#faac61" + misc_feature 18..20 + /label="yet another feature" + /ApEinfo_fwdcolor="#b1ff67" + misc_feature 14..17 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 331..334 + /label="another feature" + /ApEinfo_fwdcolor="#f8d3a9" + misc_feature 14..17 + /label="yet another feature" + /ApEinfo_fwdcolor="#f8d3a9" + misc_feature 335..347 + /label="feature" + /ApEinfo_fwdcolor="#faac61" +''', + 'Metadata1 for part_E', 'Metadata2 for part_E' ), ( - 'CFP10002AaCbbBS', + 'part_F', '''ORIGIN -1 ggatccgtaa atcggtttac ggtgcgttat gatctgtgaa acgccagcag cgcgcggtat -61 ctcgacgtaa agcggttgca cgtgatggtt gccggcatgc ctgtgcgtga atggctgtgg -121 ccggtacgtt gagcggcgtg + 1 accctgcagt ccgctcacgg accgcaagga cgggctaatt aggaggcaac gccgatgggg + 61 ccgcagttca gcgctgcaat gtttgctgaa cagggatgtc acgcatactc gtctacaccg + 121 cccgtgaccc gttatcacgg ttgaagtgtc gaggactagt gctgccgctg cgtgagggac + 181 acaagctgct atttgtccat acgccatgtg ctccgagctc atgctgccat gagacaatga + 241 gacatgtcgc caataatcga gtgacgagtc agaatgacct ggctccgcat aaccgttcaa + 301 agttattgac aacgcatctt tcgtagttcg tgcagcagcg gtctttcttc tatagccgac + 361 tagatgttaa gggactcctg gataccgcta gttttaccct ctccaggaag ccagcgaggg + 421 cgtgccgcaa gtcccaatag ataccgggca tgatcaaggg gccctgtgct ctgagtctgg + 481 aggcgacagt gcgctgcagc tcagaggtgg ttattgcgaa ccggcaccgc tggacagcac + 541 ccacggggac acgtaagtaa tttagggtct gggccaacgg ctcagcgcca gtaggattaa + 601 caaactcgac taatcaatgt gccagctact tccgccgggt ctgacggggc ggcacccatt + 661 accatgtgta ctgaataggg attccgagcg accgtaaagg cgttcctaag tgtcatatac + 721 tggcaactag aggcactcac atcggggtta agggcccacc gtaatggcca cgcaggatac + 781 caattggccg ggtgaggatc tattcacgcc gatggggagt tctaagcccg agttattggt + 841 gctagtggct tggacctgtg tgtcgatgat gcgcgatata gaggcgcggg actagctggg + 901 gtccacaggt gctatgttgg gtgcgctcta tggacgtccg gaaagagact aatgcaacgg + 961 tatggcatca agcgcgaccg atggggagac tggaaattgt gaaatagtgt actggcgcga + 1021 tcattaaata ttgcatacgc tgtccgttat gacctagagg ggattatttg aacgagaggt + 1081 cttgggaact gcattggaga tggtcagatg gaatgcgaaa tgtatcacca cgggcggccg + 1141 aaggggagac agactatccc tagttggctt cggtaaccgt aatcagatgg aacggcgggt + 1201 aatgctgata ccgagcgctc gtacggcgcg tggtgatgac acggtctgat gtcgtagcaa + 1261 acgagccggt cctcgtacaa caggctcaca tctcaatcac gcataccaac cgattacata + 1321 acgcgatcta tatttgggga actctactta ctaccctgtc tgcagagtgc gttctatgat + 1381 cctcccctac gtgacggcca acgattagtc ggcctaggtc taacggataa aaggactccc + 1441 cagtacatgt gaccatatga gccaggccgt cgagcgcgac cactccccag cctatagtga + 1501 ggaggagcgg tattcggtta aagtttagct agcgactttt ttgtcaccga agtagggacg + 1561 ggcatattgt ttacccttaa agcggggatc aatccattgg ggtcggcagt cataaaagga + 1621 tctaagcccc caaagcgcat ggtaaggtac tcccgggttt cccgaaatct aggcaagtct + 1681 cggtgggtgt cagcctgacg agtagggcac gttaccgagg ccacggtgct tgatgactac + 1741 gggtgaatcg aaccgatcaa acgcacagca tctaaaccct ggtgtactgg tccacagggg + 1801 gacaagtctt tgaagtgtcg cttcagatga cggccgcggg ccaatctgaa ttgttagaca + 1861 ccgacagtag ggtgtgcaac tcgctcgggc aagagtgtaa aggcacatcc tccccgaggt + 1921 aagttatacc gctctaacgg cgcgggcagc ttttcaactc aacacttccg cggttcagtc + 1981 ctgagcatta ggctgcatgt ctatcacaag aggtgcgggg aacgacaagg gctctggaat + 2041 tcggtctctg gtaagctccc ataagagcac cacttcgtgt accttgctaa ctcccttcat + 2101 ccccacccgc gaaaacttaa gacgtcaccc ctgttattat cccgtgcact cctaaagtgc + 2161 gatgggcaag aacgcaaaca attgtctgag atttatatgg gcggcggaca tagtcagaga + 2221 gccttatata atctcccacg tcttgccagt ccgagttatg agaaacccgg gaccgatgac + 2281 gctattacgg tcgcccagcg aggttcaaca gagcgaggca taggagtcat tacgcgtgtt + 2341 agcttcaaca tgcgtggaag tgaaacggat ctataaaacg gcgtggagtc atcagcttga + 2401 gcagatctaa cttactcgcc acgcgcgcaa atcgtctttc gctgtccacg ttatacgtaa + 2461 ctcgcttgag ''', - '''LOCUS CFP10002AaCbbBS 130 bp ds-DNA circular SYN 14-SEP-2017 + '''LOCUS part_F 2470 bp ds-DNA circular UNK 20-OCT-2019 +DEFINITION . +ACCESSION part_F +VERSION part_F +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + terminator 1991..2034 + /label="feature" + /ApEinfo_fwdcolor="#c6c9d1" + terminator 10..67 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + rep_origin complement(262..850) + /label="yet another feature" + /ApEinfo_fwdcolor="#ffef86" + CDS complement(1148..1807) + /label="feature" + /ApEinfo_fwdcolor="#b7e6d7" + misc_feature 2054..2462 + /label="another feature" + /ApEinfo_fwdcolor="#faac61" + primer_bind complement(2351..2371) + /label="yet another feature" + /ApEinfo_fwdcolor="#85dae9" + terminator 1033..1127 + /label="feature" + /ApEinfo_fwdcolor="#c6c9d1" +''', + 'Metadata1 for part_F', 'Metadata2 for part_F' + ), + ( + 'part_G', + '''ORIGIN + 1 tggctaggtc tccggaggaa cttctatggg acgaaagatg cgcagctcga caaatctcaa + 61 attggaaacc gtctaaggtc tttgagccca cgctaggcca ccgaatagtt gcgagctcgt + 121 gggcaattgc tggctagcgg tttgtatcgt atacgtaaca agagattgcg ccggattcat + 181 tcgtgtgggg tgctttcaca tcggaatact caagagtggg ggtttgcgct ttaatatgac + 241 ggcctcatgc accccaaaaa taagagcgcc aatttcatcg accacattcc ggacaattct + 301 gacttccctg tcggatcgac cctcgctcac aactcctaga actccaagac ggtaggacgt + 361 cagccgaaaa ggaggagtga cgacgggccc tcctagctga agcaatgggg ggcgtcgacc + 421 ctagcctggt gtgggacttc ggagggtcgg gcgtgtggcc attcctgcac gaggggccct + 481 tgcagtatcg aactttgacg agaaagtggg gggcgaccta taaacatagc ggagttcaat + 541 actcctgcaa gtgcatgatg acgttcagcg ttggcacatc gaacgcgtcg ctacacttgc + 601 tcaccggaag gcaaaataga ccggcagctg gcccgcacgg acgtctagac tcctacgctg + 661 tcaaatgcac gatgactatt agcatgcgga attcgaggcg gccggtacat cgagacacgc + 721 tggtcttaat acctgtgtta tgtcaaaaca agtgtctcgg cggctttgta ctacgctgtg + 781 aatgcgcatg atgttgcgag aagctgaacg ttggtagcag tctacaacag aaccgacgag + 841 ctacggacgg gttacagcag gatcccctct taaggcatta ttcgacgact ccaggttcta + 901 accgatcagt aattgcctcg gatggtcgta cgtgttaacc gagacagcaa ggcaccacat + 961 agacaactgc atagggcgcc tacaggtcca caatcagggt ggcccaagat cctcaaagac + 1021 ttgttgcagt ctctgcttat tccgtttaac acgttgtgtg agctctagct tactacctca + 1081 tcggtgtcgg gagtgattta ggaatgtgag acctagcca +''', + '''LOCUS part_G 1119 bp ds-DNA linear UNK 25-OCT-2019 +DEFINITION . +ACCESSION part_G +VERSION part_G +KEYWORDS . +SOURCE . + ORGANISM . + . FEATURES Location/Qualifiers - CDS 10..130 - /vntifkey="2" - /label=mock_gene_B - misc_feature complement(140..220) - /vntifkey="12" - /label=mock_feature_B + GoldenGate 1..13 + /label="feature" + /ApEinfo_fwdcolor="#faac61" + GoldenGate 1107..1119 + /label="another feature" + /ApEinfo_fwdcolor="#faac61" +''', + 'Metadata1 for part_G', 'Metadata2 for part_G' + ), + ( + 'part_H', + '''ORIGIN + 1 aacatggatc cgttacacaa ggtctactcc gcgatgtggg ctcaccccct agatcccttt + 61 tcctaccgcc cgatcgcaaa ctacgcgtag cttcacggct ctctgtctgt cggctgacct + 121 gcggctcatt tttcatccat ttagtatagg ttgcaagggg tgtgactgat ttctctacat + 181 aaagaagcct atagtaccac atgcaatgcc gatccggtga gtgctgtagt ccttattccg + 241 gcttggtggc ctcctgccac ttaggatcgc aacggaattc tagttcctaa cgtcccttct + 301 acctgattaa gtgagagaaa acggaaccaa cctaagacat ctatgcatcg atgttttaca + 361 atgacgagag tgctccatgg ttcatactgg ggacatagtt tcgggcattt aggcccgcaa + 421 gagttcgggt atctagtttt tccgtacgaa aaacaccacc ttagaacagg tcacacgagt + 481 acagagagta aacccgtaat gttttcaccc attccccgat ttgactgcaa acaaacaagt + 541 ctccccgtat cgcttcattg ttttatcaac gggggcggaa tcgtagacca ataattaacg + 601 acaactctag gcttttcaac cgacgggggc aaagtctgaa atgcctgaga aaggcacaac + 661 gacggtggga ggggcccctg caaatattgt tctagcactc caggattcac accaacctcg + 721 gggccagcca ttccggtact tttggttata cggcaggata ccacgtccct aagcggagta + 781 tacacggagt tgccttagcc aggtacccgc ttaaccgtcc aactcccctg agtggtacgt + 841 ccatcacgcc gcgtaaacgg tttccaaaag agtaagctta ggcattcctc acctgtcacg + 901 tccctcttaa gatccctgcc tcgaactggg atcttgtaaa aatgtggcca tgggagcagg + 961 agttcatgtg gggcgacggc gatcggacgc ccctttaaac cagagccctt gacgctagga + 1021 gatcagtaga gttacccgga atgagatctc taatctaagt ttgatacgac gaaagcggcc + 1081 tgacgggcgc tactcatgct cttagaatcc gtcacttatt ctgccacaga tccgaggtac + 1141 tgtggatgtt atttgcggag actggcctcg gattaggggt actaagtccg agatgtcatg + 1201 agttaagccc aattcactag ttgcattgtc aacgagtgga cctccaaaac gatgttaggg + 1261 tcactacccc aagcgagcac ctccgctagg accacacacc cccactttca aggtattttg + 1321 ttcgcatcac ataccgtctt ccctttgcgg tctaatagtg aagcttggga caaggaacgg + 1381 ccagtcgcag caatactacg agtgagagtc ctaggcgcaa ctacgtaggt tccgcaaacg + 1441 tgttgtggat tactgttgag gtttgagttt atccggaggg ctgtgtaaga attaccagct + 1501 agtcaaaagc cctgcatggc ctgatctcat tagatacctc ggccgggccg aggcaaatcc + 1561 gtgaacaaaa accatgcatt tattctatca tagaaacatt tgttacacat ctactggccg + 1621 tgtgccgtga acaagaactc aatttagtta tcaagggact gctgtaaacg gagccgcgtc + 1681 acccgcgtgc acacgtgtag tgcttacgcc ggcccccgtc cagcgacacc gtagtcaagt + 1741 aaaaaatgcg tattcacgac ctcacgtacc cgtttcggag ggtgccttga cgcatagagt + 1801 tgtctgtgtg attggaattt gtaaggggtc cgcccatgta aaatagagcc catgtcttac + 1861 gaggacatga ggaaacatag gttctggtgg ccttccaaga agctgcctct acactccttc + 1921 tctttaatca ccgaaaacct taccttgaga ggacgtcatt cgtcaaaaca aaatattggt + 1981 ggcaaattaa gattaccact ataggcggtc tcaaatggaa gacgcgttta gtcttcggcc + 2041 cccagacggc accggcagag ccactgccaa tgccttttac gctgaactct tcgactttgg + 2101 catgtgcgac tgactatacg ccgatggccc taccctgcag cggaaaggca cagggccaaa + 2161 aacagtggaa gcgcaccgct agagctttac taaatccttt agggtgaacc ggtgttcagt + 2221 caacagaaac atatgactag tccttaatgg cactactaaa ggcggcccat ctcttttgta + 2281 ggtcacgtct catcgtttag caagcgtccg ccatccgagg agtatcctag tacgtgagag + 2341 ggtgttttac ctcatcacat ggtttttggc tagatgtggc agatgccagc tgatacctta + 2401 caacccgcta taacggtttc tggatcgacg atacaacctg cttcggcata tcataatggc + 2461 ggcctcatag gacttccaat catggttatg cgagtttgat gtgttgaaga ttgtgagggg + 2521 aaaccttttt ccgagtacgt tgaatctgcg actgatggtg aacaactcat cgagagggat + 2581 gtgcgggcag tctccttgat gcgcgaaaag gagtcgcgac cgcgtgttcg tgacgcactt + 2641 gatgctagac cgtaggggct cattatctcc tgaaacagta gctagctttt ggtgtccgag + 2701 tcagcttagg cacagtaatt gaaaagaagg aaatgcgtga aaactaaacg tagacactcc + 2761 ttgctaagaa ttccctggtc tttttcgagc atagactacc gtaggtaaaa ggcttgtcgt + 2821 gtcacaaata gacttgatct gttcggcata tacacatcct actgcttcag taaccaagga + 2881 cgattctccg gccattggac tgtgggacca cccgcgttca aacggaatcc tctacgaacg + 2941 gttaagaaag gagcccactg cttgcggaga catatcgttg ctgagtggta caccggtgag + 3001 tcaaaaagta ctgacactac tggtggactc tcgggtacga tgtgtggggt attggcatac + 3061 tatggcgcta agcgtggaat agtgtttcca atagcccttt acctaagaag cattctgaca + 3121 catgggttgg acttttacac agacctataa ctcgtatccg gcctggtgat gtatgtccgc + 3181 ttatcactga atgcaggatt ccgccaattc cgctcgcggg ttctcggaca acgggccatg + 3241 gagatggatc aatgagccat gttgattacc atttcactac acacggttag tcaattccgg + 3301 agatcataat tcgacaattg aatatgcgtg atacgctttc tgttaccagg atcgttgcta + 3361 attagtttcc aatgtcacag tgttgggcgg cgaggtatca cggcgctctg ggtagaatgg + 3421 cggtgcctga ctggacctca taactggtaa catacctatg accaaaggag gtcagacacc + 3481 gatgagtcgg tgacatgggc ggtcacagcg tgccctgcat agtaatacag ctcgtttcta + 3541 gacatttgtc ctaattcgcc acacaagtac gagagcgggg gtaacccatc accatcgtgc + 3601 ccgtaggtac ctaatcttca tcgagcgcta ttgttaaagt ggactcaggg atcggcatct + 3661 cgtgtagctt tgagaccggg gcccgaggat gtatgccttg catggaactt gactaatctc + 3721 agtaatactg gccgtgtatt ggtgtgtctt ccttggcctc acatgggaac attaccacat + 3781 ataacatcat ggggttcagt ctattactaa cgaagtcact aaaacgtact cgacggcgca + 3841 tgcgagtatc gacgtagcgg ttggttacct taagctgact tggtctatgc atacactgat + 3901 tagcttgtag cggtggcctt cgacgtctgt atcgtaggcg ttgtttgttg caaacacaaa + 3961 cgacctagcg tcaagacccc ttctagagaa agagagtgac gactcttgtc agttcaactc + 4021 tgtggtacgc cgctgcgaga tgcgcgttgc cacggcagac cccatgaact cgttcaagct + 4081 aaactctagt tcacgctaca tgtgtttgtt tctgcgtacg caaaagtact aggtacagct + 4141 atcttttggg ccccaagtgg gaccacactt tcggtcttcc tagcaaggct ataaaaccgt + 4201 atggcatgag tccttgatct gcatttcgtt tagacagagc gagatg ''', - 'Metadata1 for CFP10002AaCbbBS', 'Metadata2 for CFP10002AaCbbBS' + '''LOCUS part_H 4246 bp ds-DNA circular UNK 07-NOV-2019 +DEFINITION . +ACCESSION part_H +VERSION part_H +KEYWORDS "creator:militzis" "marker:SmR". +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + primer_bind 1966..1982 + /label="feature" + /ApEinfo_fwdcolor="#a020f0" + terminator 3774..3860 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + rep_origin complement(63..651) + /label="yet another feature" + /ApEinfo_fwdcolor="#ffef86" + CDS 2015..3667 + /label="feature" + /ApEinfo_fwdcolor="#ffef86" + promoter 1987..2005 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + CDS complement(744..1535) + /label="yet another feature" + /ApEinfo_fwdcolor="#b7e6d7" + misc_feature 3667..3670 + /label="feature" + /ApEinfo_fwdcolor="#ff0000" + terminator 3952..3979 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + primer_bind complement(3694..3710) + /label="yet another feature" + /ApEinfo_fwdcolor="#a020f0" +''', + 'Metadata1 for part_H', 'Metadata2 for part_H' + ), + ( + 'part_I', + '''ORIGIN + 1 accctgcagt ccgcatccaa gcttgctggg gcctctatcc gggacctgct tccgtacccc + 61 gtccgcctat caggctaacg actctgcctg ccattcaggc tcaccggcaa gttggagtga + 121 cctcttcatc gatacaaata gcgcatacgc cagacatacc gcccacgcac tcgaccataa + 181 aattccccgt cacggcgcgc acctccacac tccgtggcct aaggaacgtg gcagccggct + 241 gggccacttt ttagactacc atcggctcat ttttagaagg ccaccggctg tccgtcaatc + 301 gtacccgttt aggcctcctt aacacagttc cgaatagtta cctcaagatg cggatacagg + 361 atggctcccc caggggtcta gttcagtctt ttgtcgcctg cgcttgaacc tttatgcagc + 421 gatccacaaa cggaacaccg agatttgtat ttgggagggc aggctttgga ggaacggtgt + 481 atgtactttt gcttggtacc ctaggtaccc cacgatctaa tcggtcttcc tgacaggtga + 541 cagaggaggc cgtaactgcg accacaggct aactgcggcc ttaacttatg gtcgcgaact + 601 gcataagggc gtcgccgccc gttgtcagtg cgaattctgt tagtcgtcgt gtacaccttc + 661 cggtctaaca tctcgtagtt actagaagag cggatgggtc ctgtaaagag agcaggttcc + 721 cgtcttctct cactttaccg gtactggtgt gaccgggtgt gagtgatact gtgattccgc + 781 tactattgct atgcctgccg tcgtagctag atacgatccc agaacatttt gggctgattt + 841 caagtctctc cgggattccg taacgacggt tctcgaactg aatagctttg agatatcgca + 901 atattccttg gttgactctt gtccccggga cacaagtcgt gtgcaatatg tatacgtcag + 961 tatgctcgag actcctaagg ccgcatatct atgctatcac tattgcctat gcagtaactg + 1021 gctaagcttg tggggtactt gcacatgact catgtcaagg tcggaggatt cccagacagt + 1081 tggcatcatc agtgcgttca aggcggggag cgaccagcca gatattgatc gacgaggtgc + 1141 cacgaagtgt tccaaggtta tttttagtat gttacatcca tcagcgggtc taggccatac + 1201 cggtctatat tatggtgagt cgtataggct gtaatgccgg ctgcacaatc tacggccgat + 1261 tgcacataaa atggtcaact aacgacaagc tctgattctc aacttggata aaccttatca + 1321 caaaaggtcc gacacggttc agccgaggta aatcaaagtg attatgactc caggagcgac + 1381 acaaagttgc actgtctact gttggtcatc accgtactgc aaacgggtaa agatacttag + 1441 ctttgttagc tattgcagaa cctaattgct ttcctgccct aaggcgatcc ggatcctcta + 1501 tttatcaagt taattatcag agcttagctc aagtcaaagg tcttagtcag gtatggttta + 1561 gtcggcttat ctcgctccga taaacccctc gcgcctcgga ttcattcacg cgtttatatg + 1621 gtgaggggcg acccgtaggc tagtcgcact cctcggcaat taatcctaca gaaacctaga + 1681 catgggagtt gcgatcctcg agatacggcc tgagagggtc ggcaaagtgg gtgcttcatt + 1741 ctcttcggcg gagttcgcag gctctagaat gcctggtttt catctcgaca taaattacga + 1801 tgttatctcg tgcattatta ccccttttct gcaggtttta agtcgagtct agtcttacta + 1861 acgctgttct tcccgagaag gtgtccaggt tagatctcgg catattttca ctggcgcgct + 1921 atccgacagg aagacagcac ccgttaagcg ccccagtcac atcaagatca gtcctatgtt + 1981 gactcttgct ggaggtcttc tcgaatccag ctaatgttgg attacccgcc cctctggaat + 2041 tcggtctctg cttttattat ccggcatgca tgcggcgttg catcgcttca tcgtcatcga + 2101 catatcgtta gcgggactta tcagggtccc atcacggctg tgacagctgt tcataagtgt + 2161 aatagcagtc accccaccaa atgcaagact gttcccaaac taagtgctag ggaggttggc + 2221 tacctatcgg cgtggcagtt gaccgggttt ttcttagtac ctgccttcca atctccgata + 2281 aaagcaagat gacttcctgc ttgcgctaaa gtctgaattc gctaaggggg cagattcatt + 2341 accagagact gccaaagtca accgccgaac gatactggaa tatatggagg tatgag +''', + '''LOCUS part_I 2396 bp ds-DNA circular UNK 29-OCT-2019 +DEFINITION . +ACCESSION part_I +VERSION part_I +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + terminator 1991..2034 + /label="feature" + /ApEinfo_fwdcolor="#c6c9d1" + terminator 10..67 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + rep_origin complement(262..850) + /label="yet another feature" + /ApEinfo_fwdcolor="#ffef86" + misc_feature 2054..2388 + /label="feature" + /ApEinfo_fwdcolor="#f8d3a9" + CDS complement(1148..1807) + /label="another feature" + /ApEinfo_fwdcolor="#b7e6d7" + terminator 1033..1127 + /label="yet another feature" + /ApEinfo_fwdcolor="#c6c9d1" +''', + 'Metadata1 for part_I', 'Metadata2 for part_I' ), ( - 'XYZ10003AaCbbBS', + 'part_J', '''ORIGIN -1 tccgtttggg ccgttggttc cgtccggttg gggttttcgc gctgtggccg gatccggttg -61 gcttttggcg ggggcgggtt cgtttttttc cggctttggg ccgggccgtt + 1 ctcatgggag tgtagcgcta gccatagttg acctgtcagc cggtcaaggt tggtccgaac + 61 ctagccagtt agacgaccag ctcccccact attgcacagt gcctgtataa gcacgtcagt + 121 gtctggcacc actgtgcgcg gtgtggtcct cgggacgatc ttcctacggc tacccatgcg + 181 ctagtgatta cagacgatcg ttttttcttt ttctgtggtg caaatacaca agatacgtca + 241 agagtcctag cagcctcatc ttgccaattg caggggtacc gattcaccca tggtatcagt + 301 cacgcaaaaa aagacgacat cggagttgct ggcgactggc aaaagaaaac atctatctgc + 361 cgtggcgttc gtctagcgca gcgagccgac tgactactcc gttatctcaa atttagtttc + 421 gtaagatctt cacgggagcc ggccagctga agaatctata ggtctaccgc tagaggaagc + 481 ccgtttacaa ccgacgtact agtccgacag caatcgtcag catgccaatt tattgtatca + 541 ggttgagaat gcaccactac ggaatcgacg tgccactggc cgcacgatac tagtgcgctg + 601 gtaaacaggc caggagctct aaatctggag tggtgtgaat ttaaccgcgg aacgattgtt + 661 gcacgcggtc cctgtgactc tgttgggagc actgtccccg gctccggata agtgatgtga + 721 acgaaaaggt gggctgacca gagatagggt taaggacggg cgatcgtagt ggacgattac + 781 tgctgatctt ccgagcactc tgagtcgcgc ggcgtatcgg gagttacccc gctcgctaca + 841 catctgaatt ccgccggata ctatgggtgc agagtggatc accttttcgt gacccgtata + 901 ttcgtcgttc tcatcactgt cctccgcgat ttatttcaat cgtcggtttc gccagatgca + 961 ttcctgggga agtcatcgcg acagtgcgct gcgcgcacag ctcttcttgg tttattcgag + 1021 attgtggttt atcaacatgg tctatctacg gactgattag aatattccca cgttaagccg + 1081 acgtgcattg gtactggctc cttaattaag cgcagagggt aggcgccttt tcttgtgcaa + 1141 accattatat gaggaactag caaacactat ggcgcaatat gtccacgtga ctcgagcatt + 1201 ctgtgttgcg gtagcgattt cactagtcac aaacggatag attctacggc gcacccggtg + 1261 catcgttgta tgttcagcaa tttggtcata tcccgctcct ctattcaatc tcttttttcg + 1321 tcaggggggg cacatacttg gagcagctgc gcctaacatt acaataagca gtcggagctc + 1381 agtacaaaac ccttatctta gcggtccgtt ctggaattcg gtctcaggag atatgcaggt + 1441 gtttacggct aggcacttac gcgaaatttc agctcgcggc aaactgtgct tatgcgactt + 1501 cagctagtcg tcatcgagtg ctgacgcgct tgttctacct taaggtgccc gctatcgcat + 1561 tgtccagggt tcggctatga gggtcggaac cagatcgcac ctacatgatg tcacgatact + 1621 attattcacg tcgttagaga acggacggtc cttcgtcctc acaggaaaat tattagaaat + 1681 ggtcaaccgg gtccacaaac gggcaattgc cactttggta gtacggttgc acataagatg + 1741 atatttacgc cttctgcgtt caggttacga tagtcgttga tggggctcgc tccgggtgaa + 1801 gttgatccag taaaatgggc gtcgatactt ctcctgtgag ctaagcgtct aaattcattc + 1861 ctagtctcgt gacgagaaca gaaaagacta aaccacgcgt gatggacctt ggtaagcgct + 1921 tgtcggtcta acttgtctca tctcacacgg tatgttcttg tgagcgctga ccagcccgtg + 1981 tccctgacgg ggaattcatt ctaacttacg gcttgggcgt cgtgatgttt cggaatccag + 2041 gatattacac agtagatgta gcttgtggcc gaacgagtgt atttcctgcg tcggattacc + 2101 tcatttcttg ttaatctgcc tacaattaag ccctttcagc agccttccct ctcgtttata + 2161 tttcgacagt caccgtgaca gtgtgatcga gctgtgggaa aatcacaata tagacgttag + 2221 ttgcttcgac agaaacggcg aatgtacgcg gttgtgatgg atgagacagg ccattcaatt + 2281 ctattcagcg aagttcagat tggttgctac tgctaaagga tgcgcatttg tcctttctgc + 2341 gcacctgcat atacccctaa gatgccagcg caatacggca tcgcagggca agcaacaccg + 2401 cacagcatgt ccctaaaggg aagatttaat acggactcag tcaagttgtg agaaacgaca + 2461 atacattgag tggaatgccc tttggtacgt tggcgataga tctaacgaga aacttcaacg + 2521 agatctagag tatcggactg agatgcatca tggctaggga ttgctgaatg gatatctttg + 2581 ccaaaatgag ctcgactagg aatctcagac tgccagctac gaaaagctgg gggatattca + 2641 tttccgctct tgtaaggcgc acgatgaccc tgtggagcaa aattcgacgc ggcaacgtag + 2701 tcaaagtacg gcctatctgg gacggagatg ggattgtttc tgtattcatg ccggcctctt + 2761 gagattgtaa ggatacccgg ccacagtctc gtaagaaacc cgatatcgct caaacgaatt + 2821 gacatcagtt agggcttgcg ctctagcaac cacgcgtcgg gtgttcgact gaatttaaga + 2881 tccagcgcaa accattcctt aaaggcggtc caggtgaaac cggctctgat aatgtacagt + 2941 ggattgtcca gttcgcttca aagtgcaatc aggcaaggta ctggcaagtc accgcttggg + 3001 gccggtttca gtggagcttt atcgacaaaa ggccgggccc tttggcctag agctcacttt + 3061 tggtgtcgtt cacgagtgag aactttggct cgcagcttga atgcttgtca cgtttagggt + 3121 tatacaacgt ttctataaac tacctatgac aaatcccgat cttctgaaac tccataagga + 3181 ctaagagagt ccgcgacagt ttcacttggt cggtgctatt gactatgtca cgcatgcccg + 3241 gtaaagcttt taagcaaagc ctgatatatc acgggaggtt actcaaagca ttttctaaag + 3301 ggacagcgga ctcacattag cctaatataa acccgatcag gccatgcacc tcgattcacc + 3361 ggaaggtagt accatgcacc ggatatttgg gacaacagtg aatagtacat cgtaaaatgt + 3421 caaggcctag ctatttttca ctggtgtctt atctctatta caacacacac ggatgtcccg + 3481 agcctacact ttcaaatata ctcaaggttc gctgttaagg gtaatacaag agtgctcggt + 3541 ttagtatcca tatgttggta caagtgactg tgctagccgt aaattaattc ggcttccatt + 3601 ccagcttggg tgtttagggt ctagacggtt gaaaccagaa agagtacaga caaaaccgta + 3661 gctctcccaa ggttgatcct ccagacacct acccacacta gtagcgcagg cctagaggag + 3721 acgttaggag cggaattgta cattcagtat cgcattaagc acaaagacag acaaacctag + 3781 aagccactta tcccctcgta ggagtacaac ggcagcgctt tcgggaggag ttgcctaact + 3841 acgctctgga cagcaagtcc cagaatgaag aaaatgactt ggcgagaacc caccactaca + 3901 tgcagggtct tgggaccggt cagcacagct tatccatgcg gcaattccgg acgaccgcga + 3961 atgaggatca cgacactgcc gatgttgcac cattgacctt ctcctatgca acaagggctt + 4021 aagatggtag atggtaatag agtagcctgc gaccttatgc ggtaatacac aaaaaccggt + 4081 aaacagtgcg ttgatgctgt gtgctggcgc atttgtgtac cttgctgggc tcgtataaaa + 4141 ttctgtcagc aggacgttca cctcccttct gctagtcgct aggcacaaac ggaaaaggtc + 4201 taatcgcgcg cgtgctcgtt agagtactgg ggcctcccac cacggatgat cacctcgccg + 4261 atacatttgg ccttatgtct caataagacc tcatggtcta tcctacacca tagatttgga + 4321 aagtctagtt gctgcctagc aggctgatag caagcgtcgt acgaggatcg aggaagggca ''', - '''LOCUS XYZ10003AaCbbBS 120 bp ds-DNA circular SYN 14-SEP-2017 + '''LOCUS part_J 4380 bp ds-DNA circular UNK 31-OCT-2019 +DEFINITION . +ACCESSION part_J +VERSION part_J +KEYWORDS "Source" "Sequence" "Freezer" "Shelf" "Box" "Concentration" "Use" + "creator:SynthSys Center" "marker:SmR". +SOURCE . + ORGANISM . + . FEATURES Location/Qualifiers - CDS 15..115 - /vntifkey="3" - /label=mock_gene_C - misc_feature 130..210 - /vntifkey="13" - /label=mock_feature_C + rep_origin join(4298..4380,1..166) + /label="feature" + /ApEinfo_fwdcolor="#ffef86" + promoter 1442..1476 + /label="another feature" + /ApEinfo_fwdcolor="#85dae9" + misc_feature 2345..2362 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + CDS complement(2550..3341) + /label="feature" + /ApEinfo_fwdcolor="#b7e6d7" + misc_feature 1187..1210 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 1366..1396 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + CDS complement(2550..3455) + /label="feature" + /ApEinfo_fwdcolor="#993366" + misc_feature 2421..2449 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + -35_signal 3766..3771 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + CDS 167..1186 + /label="feature" + /ApEinfo_fwdcolor="#993366" + misc_feature 2526..2549 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + gene 167..1186 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + -10_signal 3744..3749 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + CDS 1503..2222 + /label="another feature" + /ApEinfo_fwdcolor="#ffef86" + misc_feature 1409..1426 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + -35_signal 3589..3594 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + terminator 2227..2298 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + misc_feature 1319..1343 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 1370..1394 + /label="feature" + /ApEinfo_fwdcolor="#f8d3a9" + misc_RNA 3625..4177 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + terminator 2314..2341 + /label="yet another feature" + /ApEinfo_fwdcolor="#c6c9d1" + misc_feature 2364..2474 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + misc_RNA complement(3628..3735) + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 4264..4272 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + RBS 1485..1496 + /label="feature" + /ApEinfo_fwdcolor="#ffef86" + misc_feature 2353..2356 + /label="another feature" + /ApEinfo_fwdcolor="#ff0000" + misc_feature complement(2476..2516) + /label="yet another feature" + /ApEinfo_fwdcolor="#c6c9d1" + misc_feature 3539..3562 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 1427..1430 + /label="another feature" + /ApEinfo_fwdcolor="#ff0000" + -10_signal 3610..3615 + /label="yet another feature" + /ApEinfo_fwdcolor="#b4abac" + misc_feature 1211..1258 + /label="feature" + /ApEinfo_fwdcolor="#c6c9d1" + gene complement(2550..3455) + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + rep_origin 3589..4177 + /label="yet another feature" + /ApEinfo_fwdcolor="#ffef86" + misc_feature 1414..1419 + /label="feature" + /ApEinfo_fwdcolor="#84b0dc" + misc_feature 2388..2411 + /label="another feature" + /ApEinfo_fwdcolor="#b4abac" + terminator 1409..1411 + /label="yet another feature" + /ApEinfo_fwdcolor="#c6c9d1" + misc_feature 2357..2362 + /label="feature" + /ApEinfo_fwdcolor="#84b0dc" ''', - 'Metadata1 for XYZ10003AaCbbBS', 'Metadata2 for XYZ10003AaCbbBS' + 'Metadata1 for part_J', 'Metadata2 for part_J' ), ( - 'QWE10004AaCbbBS', + 'part_K', '''ORIGIN -1 atgtttgctg gggcgatgct ggggctgctt tgttggcgcc gttttggtgg tgtttggttc -61 tgctggggcc gggcgtgttt cgcgttggcg cgtgcgcgtt + 1 accagacagc ttccctgctg cttagagtgc catggggaat tgatctgtgt tcaatgactt + 61 taccataagc gcgcatcgtc attgcatcac gtgctttatc tctcgtagct agtagggaac + 121 aagagtttgc gaccactggt ggaatttcta gccgctatgt gaaaagtcac tagtagtatt + 181 aatagtcggc acatcgcgta cgcagtgctg agattcccct cactgttact tgagctagtc + 241 gcgccttgac agaccgcctt tcgaaggtgg cagagtgcct aatatattgc cacgttgagc + 301 gtactccttc ccggagtttc atcttaccgc cgggcgcgcg aagctacgtt tttcgaattt + 361 actaacgcac gctgacggtg gaagggcgat tggactggtt agattcaggt atgccttaag + 421 cgtactttac aaccagaggc tttatttgat tgtctaatct tcgtcaaaga acgaatacca + 481 gcgcttgagg ggtgactaga ctaataggag acaccgtctg tatcactcgt cggctatggc + 541 cgtactgtga acgcgacggg ccctaccagg ccacagattc ctatgtacgt tgcaagggtg + 601 ggctttgacc gttgcaacgg cgcactaggt ggcattcttc tctgctgcca atgatccgcc + 661 tcgccgagct aggggcgaag caggttatga cgcagcggaa cggtagtact atctaatatc + 721 aactaaaatt gtttctcaaa ggttcaaact agtattcttt attagaaacg atgatggcat + 781 ccggaacagg gttatggccc aggtgctgga tgaagccttg cctcgaggga cttagtcgcg + 841 tcgcccctct accaaggcgc taacggctag cgagatggtt gaggcgggag ccccgccact + 901 ttctagttga attcagagct acgtatcctg atgctaatcc ctcgaagaac tttccgatgc + 961 agctactatc tctttcgtaa agttagaata ggaacccggt aacggtggaa cgtcccgtca + 1021 taggaggttg tctcctacac tatctaagta cgtcagaaga tcgatttcct cagccgctga + 1081 ccccgtccgg catgaccagc gccgaacgta taggccgtat tgctgccgga acgactgctt + 1141 caaaggtaac catagccgtg gtacagtgac aacccactta gctattaaat catgcgcact + 1201 ctagacctct tgcacatacg gagcaactat gtatctaatt ggcacgagac atagaggagg + 1261 gccaatcaca gtagtttact ggtcgaattc cacctgcata tggagagaca ctccttcatc + 1321 aacagcagag gttacatacg tttaacctga ccgatggttg cccatcgaaa gcaaggaccc + 1381 acgggtaggc agctgttgtt tgatatgctt ttgtccccgg aaggcgccga taaaattata + 1441 cgccgtcccc cgcgtccgtt acgagcttcg tgatgttgcg ggctgaagtt ccctacgagt + 1501 caataggcca actcgaatgg ctaaatggtt gcaacccaca ggctcaactt tgaaggtaat + 1561 acgccaaaat ccaatatgct ctttcgggta gcgcataaaa ccttctgggg gccactgcag + 1621 acagtcatgg aggactacgt gcaacactac gctctagagt gatgatgtgg cagtcaaccg + 1681 agggctgtta agagaagtct gtgcacgaaa atcaatgagt cggtgtaatc ttcaccttcc + 1741 tacaaaccaa ggcttgaggg cctcaatttc gagcaccact tcttgaccaa gccgttcgcc + 1801 ggtataggag ttacgaattc gggtcgtctg ccgtctttga accatagata agtacctccc + 1861 gagtcgggag aacacgaatc gcatcagaac tcatcgaagg gtgttacttt gcccatcggc + 1921 atccccgaag attaattgca ttcgaaattt taacttcgag aatcatccgt gctaaccaac + 1981 gtggacgagc tatgaacgtt tacgtgttca gtatctagga attgacacgt ctccgatagc + 2041 gggagtcacg gcatgagtta cggcttttgt gaccagcgtc tgtgtaattt tattgacagt + 2101 ttcatatata gtgtctcgtc ttgcctttga gattcacagg ctgtaagagg gatgccgtcg + 2161 tgtatatgcc tgcagttaga gcttccttgt caggacgagc aactcactcc ttctggtgat + 2221 gctttgctag catgtagctt cgggtacttg cggaaaagga cagcctacag tgtctgcggc + 2281 ggtacgtcac taatatgaca tacgctgtgg acatcgtgaa gcggcgaatc gctccagatt + 2341 gaggtttaca gagtactcca tagtcacaca actcagaata tgcaggtgct gcagtgaccg + 2401 aatcctctca ggtcgcgctg gcggcccgtt tgagagtgct gaaagcgaag tttatccgca + 2461 ccgtcatcca gtgcacctcc cccagagaat gattacttgt gaatgcggtt aacctgaggg + 2521 ccgacgccgc gattaaattt ttaacgtgat gcacaagctg ggggcactct cccctggggt + 2581 caggttataa ttttaaaccc actacggacc tggactgcaa gatgcttagt ccacgcgtct + 2641 catagaccgt cggtctatag ccatgttcaa cgccgccagg ctgggcgcat aactgtatgt + 2701 gactttgtcc acatccaagg cgacgatggc ggcagttggc cggagggctg gctgtcaagg + 2761 ggccacgcgg atgaagggag ctcatacgca actatggagc gcggtatata gtataggatc + 2821 cgccgggaca cgcgggaatc aagggacaaa ggagcagtca gcgtgaaatc tttacgggtg + 2881 aagcgcgctc gtaccaccta gtcccgccta aggcccttgt gtcgtgcaac atcgctgggg + 2941 cgacggatga caatatgatc aaggcccgag agctttgaat gtaagaggcg tattataaag + 3001 cctaggtccg catgttgata cggggagcag cccatgcgca gtaggaaggt ccgaccaccc + 3061 ttttctgagg tctactccaa cctccttgcc gagtgctctc cgctatctcc acgcatagca + 3121 tactccgctt ctaacatctt cttcaaagca tacacgctac ttagcagagc aaatcgacac + 3181 gcccatggag tggtccgctc aaaccgcgca attaagtata agctaatgtg acggaccgga + 3241 cctacgattt cccccaactc gtggggatca gttgactcgt ctcagcttat gagacataat + 3301 tacggtcata gggtacgcct atgcccctca gagatctcta ggtcatatgc cctatcgggt + 3361 gctcggtgac cattgtctca tacaaagtca tatttggcag ggcttctatg gacgagtatt + 3421 atgtgcccaa aagggaacgt ctgagttggg attcgcttct aaccaatact ctaatggtac + 3481 ctaatttaat gtggtcgctg cgcaccccgc cgggtacaac tgctgagttc ctgagatcgg + 3541 tacggcaaac atcttttatc cagacgaggg ttctggccag aattgatgtt cagatacgag + 3601 aaggcatgtc atgtcacaag gattttggag aatt ''', - '''LOCUS QWE10004AaCbbBS 130 bp ds-DNA circular SYN 14-SEP-2017 + '''LOCUS part_K 3634 bp ds-DNA circular UNK 28-OCT-2019 +DEFINITION . +ACCESSION part_K +VERSION part_K +KEYWORDS "creator:SynthSys Center" "marker:KanR, BlpR". +SOURCE . + ORGANISM . + . FEATURES Location/Qualifiers - CDS 20..130 - /vntifkey="4" - /label=mock_gene_D - misc_feature complement(145..225) - /vntifkey="14" - /label=mock_feature_D + misc_feature 1268..1284 + /label="feature" + /ApEinfo_fwdcolor="#b4abac" + CDS complement(join(3199..3634,1..380)) + /label="another feature" + /ApEinfo_fwdcolor="#b7e6d7" + misc_feature 2374..2377 + /label="yet another feature" + /ApEinfo_fwdcolor="#faac61" + misc_feature 2395..2419 + /label="feature" + /ApEinfo_fwdcolor="#f8d3a9" + promoter 1382..1560 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + misc_feature 2370..2373 + /label="yet another feature" + /ApEinfo_fwdcolor="#ff0000" + misc_feature 2389..2393 + /label="feature" + /ApEinfo_fwdcolor="#84b0dc" + misc_feature 1239..1261 + /label="another feature" + /ApEinfo_fwdcolor="#f8d3a9" + rep_origin complement(2510..3098) + /label="yet another feature" + /ApEinfo_fwdcolor="#ffef86" + terminator 2117..2369 + /label="feature" + /ApEinfo_fwdcolor="#c6c9d1" + CDS 1562..2112 + /label="another feature" + /ApEinfo_fwdcolor="#b7e6d7" + rep_origin 671..1106 + /label="yet another feature" + /ApEinfo_fwdcolor="#ffef86" ''', - 'Metadata1 for QWE10004AaCbbBS', 'Metadata2 for QWE10004AaCbbBS' + 'Metadata1 for part_K', 'Metadata2 for part_K' + ), + ( + 'part_L', + '''ORIGIN + 1 gtccgatgcg agcaccacct atagataccc taatcagcat ggtcccggtg accattacca + 61 ccgacggcct tgttttaaac gaaggcgctc actatacaag aaactaatgt ctcccacaag + 121 gctcagaccc agccggtgct ttcagcgctc cccgttggcg ccccccgaag accatagaga + 181 ggtgctctgt taacaactat aatgaaaggg attattgagg gagtcggagg tgaattctga + 241 agccttaccc ctacggtcgt ggtcatcatc acggatcgcg ataagcggcc ggtctgttac + 301 ggacgccact acgaggaggg tttcttggca atcaaggcta cgcattacaa ccatcggggt + 361 cggtctggct gaacaatctt gatgttcaac ctttgttacc ggctccttgt gttattatcc + 421 ggtttttttg atctatatgt ttataaggaa gcggtgcaga ccgtagagaa ataccggcta + 481 aggcagtcgc tcaatgcaca ccagcatcgc cgagacatat aaagccataa acattaattg + 541 gaatgctagt cacagcgtgt tgactggacg cttaaaagtt tctacaaaag gtatagtttt + 601 aacatttctc tgagttagcg ctatcgggtc gactgacatc tagaattgac acgttactca + 661 cctggatcct agtcacactc cgggaaccgc tcgcttagtg gcagtagcgg ggggcgtccc + 721 taggatagct gcgcaaagcg tggtttatct aatcgtggct tgtgtggaca tgatgctgtt + 781 caggcgcatc tgtggccgcc acagcattac caagctaatc agaaaccgcg gcatgtcccc + 841 gcgatgcgag aggcatctgt tagagccaaa gagtggaggt ctgtaatatc gctagcggag + 901 attttctaag gggcgtggga ctttatcccg atatggctga acgatccaac ggcaaatggt + 961 tctgccattg aactttaacc atgaatagac tccaggcgag ggataatgga aataatagca + 1021 ggaaatgaca atctactagg tgcgcactat caagattgta tgtttgcgta tcgtagttct + 1081 aatggtcttg tgtcccgtat tgggtcggac ggtgctgttc ctgatcgtag caatgcccgg + 1141 ttagaatcac gcatcggagc gatcatttcg ggcgatacgc gttcgttctg tccactcttg + 1201 tgggagtccg acgtatgcct gctcggtatt gttttattca ggcgacagta cctcccattc + 1261 aaatatacag ggttatacta cacaccacga gtaataaaga cttgtgttgt gccaattcct + 1321 cgtgggactg ccacgctcgt gagcttcgcg gttacatacc cctatgtccc caactgttgg + 1381 tggcaaatcc ctaatctaat ctattgtatc acagtcggtc aacgactgaa attggggcaa + 1441 caccaacagt gctcttacga tattcgtctg tgtctaacaa tccaacaaaa agctgttatt + 1501 atgatggagg atcttggatt gcgtcagtac tacggtgttg tacgagaatt gcatgatgat + 1561 tcctcgatgt cgagtccttg caagatcgtg atctatagcc aagctgctgc tgtagatcaa + 1621 cctcaccggg gcgggggtcc cattactatg ggcggcatta gagtaccata gatgaacgcg + 1681 agcagagaca tgtcaatgta tcccagtcct gcagtactac gtcagtctct gctcctgggg + 1741 ccaatgcacg cctgtagaat agggccgtgt tcccatgaga aatttgaggg acttacgatt + 1801 agatggcctt ggcaggggac tccgcgtacg tgtggggatg aaccggcacc ggccttggcc + 1861 ctgagtaaat gtaagcgata tcaacttcgc tattcatgat cagtggtatt cgtgtaggca + 1921 ccgaaagtcc cttggcgaaa gtagagacat acgatacgga ccgcaagcga gcagaatttc + 1981 agcacatgac agttattagc ttttttctaa tggtgctccc attatgattg tcaagtcccg + 2041 actgctagct gtaggatgaa acacatccac acacgtgtta ccatactgat tttgacacta + 2101 cttcctaacc gggccgaatg gtatctgctg cgatgcttag ttacgtaaca gccgaatgtc + 2161 acgccactgc atattgtggt tctggaattc cacctgcata tgtcacgcta gagaccgtat + 2221 gaggtgggcg gatagtggtg acttcaaacc catatgcagg tgctgca +''', + '''LOCUS part_L 2267 bp ds-DNA circular UNK 28-OCT-2019 +DEFINITION . +ACCESSION part_L +VERSION part_L +KEYWORDS "creator:SynthSys Center" "marker:KanR". +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + misc_feature join(2263..2267,1) + /label="feature" + /ApEinfo_fwdcolor="#84b0dc" + terminator 2..59 + /label="another feature" + /ApEinfo_fwdcolor="#c6c9d1" + CDS complement(1140..1955) + /label="yet another feature" + /ApEinfo_fwdcolor="#b7e6d7" + misc_feature 2206..2209 + /label="feature" + /ApEinfo_fwdcolor="#ff0000" + misc_feature 2202..2205 + /label="another feature" + /ApEinfo_fwdcolor="#faac61" + terminator 2139..2182 + /label="yet another feature" + /ApEinfo_fwdcolor="#c6c9d1" + rep_origin complement(254..842) + /label="feature" + /ApEinfo_fwdcolor="#ffef86" + misc_feature 2248..2251 + /label="another feature" + /ApEinfo_fwdcolor="#ff0000" + misc_feature 2185..2190 + /label="yet another feature" + /ApEinfo_fwdcolor="#84b0dc" + terminator 1025..1119 + /label="feature" + /ApEinfo_fwdcolor="#c6c9d1" +''', + 'Metadata1 for part_L', 'Metadata2 for part_L' ) ])