Mercurial > repos > dfornika > picard

annotate picard_CreateSequenceDictionary.xml @ 3:fab2eeb2e8af draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
author dfornika
date Mon, 14 Jan 2019 19:59:38 -0500
parents b602bf9f81d2
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
1 <?xml version="1.0" encoding="utf-8"?>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
2 <tool id="picard_CreateSequenceDictionary" name="CreateSequenceDictionary" version="@TOOL_VERSION@+galaxy0">
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
3 <description></description>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
4 <macros>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
5 <import>macros.xml</import>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
6 </macros>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
7 <requirements>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
8 <requirement type="package" version="@TOOL_VERSION@">picard</requirement>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
9 </requirements>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
10 <version_command>picard CreateSequenceDictionary --version</version_command>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
11 <command detect_errors="exit_code">
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
12 <![CDATA[
1
43a465506940 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents: 0
diff changeset
13 rm '$output' &&
3
fab2eeb2e8af planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents: 2
diff changeset
14 ln -s '$reference' reference.fa &&
0
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
15 picard CreateSequenceDictionary
2
b602bf9f81d2 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents: 1
diff changeset
16 REFERENCE=reference.fa
0
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
17 OUTPUT='$output'
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
18 ]]>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
19 </command>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
20 <inputs>
2
b602bf9f81d2 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents: 1
diff changeset
21 <param name="reference" type="data" format="fasta,fa"/>
0
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
22 </inputs>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
23 <outputs>
1
43a465506940 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents: 0
diff changeset
24 <data name="output" type="data" format="sam"/>
0
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
25 </outputs>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
26 <tests>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
27 </tests>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
28 <help>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
29 <![CDATA[
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
30 ]]>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
31 </help>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
32 <citations>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
33 </citations>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
dfornika
parents:
diff changeset
34 </tool>