Mercurial > repos > dfornika > picard

diff picard_CreateSequenceDictionary.xml @ 1:43a465506940 draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
author dfornika
date Mon, 14 Jan 2019 19:50:17 -0500
parents 5bd2f2397b37
children b602bf9f81d2
line wrap: on
line diff
--- a/picard_CreateSequenceDictionary.xml	Mon Jan 14 19:30:07 2019 -0500
+++ b/picard_CreateSequenceDictionary.xml	Mon Jan 14 19:50:17 2019 -0500
@@ -10,16 +10,17 @@
   <version_command>picard CreateSequenceDictionary --version</version_command>
   <command detect_errors="exit_code">
     <![CDATA[
+      rm '$output' &&
       picard CreateSequenceDictionary
         REFERENCE='$reference'
         OUTPUT='$output'
     ]]>
   </command>
   <inputs>
-    <param name="reference" type="data" format="fasta,fa"/>
+    <param name="reference" type="data" format="fasta,fa,fasta.gz,fa.gz"/>
   </inputs>
   <outputs>
-    <data name="output" type="data" />
+    <data name="output" type="data" format="sam"/>
   </outputs>
   <tests>
   </tests>