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comparison picard_CreateSequenceDictionary.xml @ 3:fab2eeb2e8af draft default tip

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
author dfornika
date Mon, 14 Jan 2019 19:59:38 -0500
parents b602bf9f81d2
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2:b602bf9f81d2 3:fab2eeb2e8af
9 </requirements> 9 </requirements>
10 <version_command>picard CreateSequenceDictionary --version</version_command> 10 <version_command>picard CreateSequenceDictionary --version</version_command>
11 <command detect_errors="exit_code"> 11 <command detect_errors="exit_code">
12 <![CDATA[ 12 <![CDATA[
13 rm '$output' && 13 rm '$output' &&
14 ln -s '$reference' reference.fa 14 ln -s '$reference' reference.fa &&
15 picard CreateSequenceDictionary 15 picard CreateSequenceDictionary
16 REFERENCE=reference.fa 16 REFERENCE=reference.fa
17 OUTPUT='$output' 17 OUTPUT='$output'
18 ]]> 18 ]]>
19 </command> 19 </command>