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changeset 2:b602bf9f81d2 draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
author dfornika
date Mon, 14 Jan 2019 19:53:59 -0500
parents 43a465506940
children fab2eeb2e8af
files picard_CreateSequenceDictionary.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/picard_CreateSequenceDictionary.xml	Mon Jan 14 19:50:17 2019 -0500
+++ b/picard_CreateSequenceDictionary.xml	Mon Jan 14 19:53:59 2019 -0500
@@ -11,13 +11,14 @@
   <command detect_errors="exit_code">
     <![CDATA[
       rm '$output' &&
+      ln -s '$reference' reference.fa
       picard CreateSequenceDictionary
-        REFERENCE='$reference'
+        REFERENCE=reference.fa
         OUTPUT='$output'
     ]]>
   </command>
   <inputs>
-    <param name="reference" type="data" format="fasta,fa,fasta.gz,fa.gz"/>
+    <param name="reference" type="data" format="fasta,fa"/>
   </inputs>
   <outputs>
     <data name="output" type="data" format="sam"/>