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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
author dfornika
date Mon, 14 Jan 2019 19:59:38 -0500
parents b602bf9f81d2
children
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<?xml version="1.0" encoding="utf-8"?>
<tool id="picard_CreateSequenceDictionary" name="CreateSequenceDictionary" version="@TOOL_VERSION@+galaxy0">
  <description></description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <requirements>
    <requirement type="package" version="@TOOL_VERSION@">picard</requirement>
  </requirements>
  <version_command>picard CreateSequenceDictionary --version</version_command>
  <command detect_errors="exit_code">
    <![CDATA[
      rm '$output' &&
      ln -s '$reference' reference.fa &&
      picard CreateSequenceDictionary
        REFERENCE=reference.fa
        OUTPUT='$output'
    ]]>
  </command>
  <inputs>
    <param name="reference" type="data" format="fasta,fa"/>
  </inputs>
  <outputs>
    <data name="output" type="data" format="sam"/>
  </outputs>
  <tests>
  </tests>
  <help>
    <![CDATA[
    ]]>
  </help>
  <citations>
  </citations>
</tool>