Mercurial > repos > dfornika > picard

annotate picard_CreateSequenceDictionary.xml @ 2:b602bf9f81d2 draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
author dfornika
date Mon, 14 Jan 2019 19:53:59 -0500
parents 43a465506940
children fab2eeb2e8af
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5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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1 <?xml version="1.0" encoding="utf-8"?>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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2 <tool id="picard_CreateSequenceDictionary" name="CreateSequenceDictionary" version="@TOOL_VERSION@+galaxy0">
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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3 <description></description>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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4 <macros>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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5 <import>macros.xml</import>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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6 </macros>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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7 <requirements>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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8 <requirement type="package" version="@TOOL_VERSION@">picard</requirement>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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9 </requirements>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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10 <version_command>picard CreateSequenceDictionary --version</version_command>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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11 <command detect_errors="exit_code">
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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12 <![CDATA[
1
43a465506940 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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13 rm '$output' &&
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b602bf9f81d2 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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14 ln -s '$reference' reference.fa
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5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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15 picard CreateSequenceDictionary
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b602bf9f81d2 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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16 REFERENCE=reference.fa
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5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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17 OUTPUT='$output'
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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18 ]]>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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19 </command>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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20 <inputs>
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b602bf9f81d2 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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21 <param name="reference" type="data" format="fasta,fa"/>
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5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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22 </inputs>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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23 <outputs>
1
43a465506940 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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24 <data name="output" type="data" format="sam"/>
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5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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25 </outputs>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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26 <tests>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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27 </tests>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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28 <help>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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29 <![CDATA[
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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30 ]]>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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31 </help>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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32 <citations>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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33 </citations>
5bd2f2397b37 planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
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34 </tool>