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changeset 0:5bd2f2397b37 draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/picard commit 54c5ec0b3958115ccb9071184268bfe4f7425baa-dirty
author dfornika
date Mon, 14 Jan 2019 19:30:07 -0500
parents
children 43a465506940
files macros.xml picard_CreateSequenceDictionary.xml
diffstat 2 files changed, 35 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Mon Jan 14 19:30:07 2019 -0500
@@ -0,0 +1,3 @@
+<macros>
+    <token name="@TOOL_VERSION@">2.18.23</token>
+</macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/picard_CreateSequenceDictionary.xml	Mon Jan 14 19:30:07 2019 -0500
@@ -0,0 +1,32 @@
+<?xml version="1.0" encoding="utf-8"?>
+<tool id="picard_CreateSequenceDictionary" name="CreateSequenceDictionary" version="@TOOL_VERSION@+galaxy0">
+  <description></description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <requirements>
+    <requirement type="package" version="@TOOL_VERSION@">picard</requirement>
+  </requirements>
+  <version_command>picard CreateSequenceDictionary --version</version_command>
+  <command detect_errors="exit_code">
+    <![CDATA[
+      picard CreateSequenceDictionary
+        REFERENCE='$reference'
+        OUTPUT='$output'
+    ]]>
+  </command>
+  <inputs>
+    <param name="reference" type="data" format="fasta,fa"/>
+  </inputs>
+  <outputs>
+    <data name="output" type="data" />
+  </outputs>
+  <tests>
+  </tests>
+  <help>
+    <![CDATA[
+    ]]>
+  </help>
+  <citations>
+  </citations>
+</tool>