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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 </set_environment>
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5
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1
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6 <package name="igBlastn" version="1.0.0">
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0
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7 <install version="1.0">
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8 <actions>
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23
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9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
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14
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10 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
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11 </action>
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24
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12
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13
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14 <action type="move_directory_files">
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27
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15 <source_directory>ncbi-igblast-1.0.0</source_directory>
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28
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16 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory>
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24
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17 </action>
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18 <action type="set_environment">
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28
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19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
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24
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20 </action>
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21
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35
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22 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.ndm.imgt</action>
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23 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.ndm.kabat</action>
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24 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.pdm.imgt</action>
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25 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.pdm.kabat</action>
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26
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27 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nhr</action>
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28 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nin</action>
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29 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nog</action>
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30 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsd</action>
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31 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsi</action>
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32 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsq</action>
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33 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.phr</action>
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34 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.pin</action>
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35 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.pog</action>
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36 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psd</action>
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37 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psi</action>
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38 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psq</action>
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39
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40 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V</action>
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41 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nhr</action>
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42 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nin</action>
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43 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nog</action>
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44 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsd</action>
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45 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsi</action>
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46 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsq</action>
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47 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.phr</action>
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48 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pin</action>
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49 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pog</action>
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50 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psd</action>
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51 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psi</action>
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52 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psq</action>
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53 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V_prot</action>
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54
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55 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
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56 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
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33
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57
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58 <action type="move_file">
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59 <source>human_V</source>
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60 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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61 </action>
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34
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62 <action type="move_file">
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63 <source>human_V.nhr</source>
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64 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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65 </action>
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66 <action type="move_file">
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67 <source>human_V.nin</source>
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68 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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69 </action>
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70 <action type="move_file">
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71 <source>human_V.nog</source>
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72 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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73 </action>
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74 <action type="move_file">
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75 <source>human_V.nsd</source>
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76 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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77 </action>
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78 <action type="move_file">
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79 <source>human_V.nsi</source>
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80 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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81 </action>
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82 <action type="move_file">
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83 <source>human_V.nsq</source>
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84 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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85 </action>
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86 <action type="move_file">
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87 <source>human_V.phr</source>
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88 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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89 </action>
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90 <action type="move_file">
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91 <source>human_V.pin</source>
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92 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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93 </action>
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94 <action type="move_file">
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95 <source>human_V.pog</source>
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96 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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97 </action>
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98 <action type="move_file">
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99 <source>human_V.psd</source>
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100 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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101 </action>
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102 <action type="move_file">
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103 <source>human_V.psi</source>
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104 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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105 </action>
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106 <action type="move_file">
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107 <source>human_V.psq</source>
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108 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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109 </action>
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110 <action type="move_file">
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111 <source>human_V_prot</source>
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112 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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113 </action>
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114
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115
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116 <action type="move_file">
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117 <source>human_TR_V.nhr</source>
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118 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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119 </action>
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120 <action type="move_file">
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121 <source>human_TR_V.nin</source>
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122 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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123 </action>
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124 <action type="move_file">
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125 <source>human_TR_V.nog</source>
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126 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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127 </action>
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128 <action type="move_file">
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129 <source>human_TR_V.nsd</source>
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130 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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131 </action>
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132 <action type="move_file">
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133 <source>human_TR_V.nsi</source>
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134 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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135 </action>
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136 <action type="move_file">
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137 <source>human_TR_V.nsq</source>
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138 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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139 </action>
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140 <action type="move_file">
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141 <source>human_TR_V.phr</source>
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142 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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143 </action>
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144 <action type="move_file">
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145 <source>human_TR_V.pin</source>
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146 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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147 </action>
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148 <action type="move_file">
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149 <source>human_TR_V.pog</source>
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150 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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151 </action>
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152 <action type="move_file">
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153 <source>human_TR_V.psd</source>
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154 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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155 </action>
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156 <action type="move_file">
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157 <source>human_TR_V.psi</source>
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158 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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159 </action>
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160 <action type="move_file">
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161 <source>human_TR_V.psq</source>
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162 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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163 </action>
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164
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0
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165 </actions>
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166 </install>
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167 <readme>
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19
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168 Downloads igBlast with the human_V internal data file.
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0
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169 </readme>
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170 </package>
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171 </tool_dependency>
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