|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <set_environment version="1.0">
|
|
|
4 </set_environment>
|
|
|
5
|
|
1
|
6 <package name="igBlastn" version="1.0.0">
|
|
0
|
7 <install version="1.0">
|
|
|
8 <actions>
|
|
23
|
9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
|
|
14
|
10 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
|
|
|
11 </action>
|
|
24
|
12
|
|
|
13
|
|
|
14 <action type="move_directory_files">
|
|
27
|
15 <source_directory>ncbi-igblast-1.0.0</source_directory>
|
|
28
|
16 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory>
|
|
24
|
17 </action>
|
|
|
18 <action type="set_environment">
|
|
28
|
19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
|
|
24
|
20 </action>
|
|
|
21
|
|
33
|
22 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V</action>
|
|
|
23 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nhr</action>
|
|
|
24 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nin</action>
|
|
|
25 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nog</action>
|
|
|
26 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsd</action>
|
|
|
27 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsi</action>
|
|
|
28 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsq</action>
|
|
|
29 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.phr</action>
|
|
|
30 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pin</action>
|
|
|
31 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pog</action>
|
|
|
32 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psd</action>
|
|
|
33 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psi</action>
|
|
|
34 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psq</action>
|
|
|
35 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V_prot</action>
|
|
|
36
|
|
27
|
37 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
|
|
|
38 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
|
|
33
|
39
|
|
|
40 <action type="move_file">
|
|
|
41 <source>human_V</source>
|
|
|
42 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
43 </action>
|
|
22
|
44
|
|
0
|
45 </actions>
|
|
|
46 </install>
|
|
|
47 <readme>
|
|
19
|
48 Downloads igBlast with the human_V internal data file.
|
|
0
|
49 </readme>
|
|
|
50 </package>
|
|
|
51 </tool_dependency>
|
