Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 35:31dae1214002 draft

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author davidvanzessen
date Tue, 24 Sep 2013 10:13:32 -0400
parents 8b2161007a67
children 1d15cd0bd913
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34:8b2161007a67 35:31dae1214002
16 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory> 16 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory>
17 </action> 17 </action>
18 <action type="set_environment"> 18 <action type="set_environment">
19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable> 19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
20 </action> 20 </action>
21
22 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.ndm.imgt</action>
23 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.ndm.kabat</action>
24 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.pdm.imgt</action>
25 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.pdm.kabat</action>
26
27 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nhr</action>
28 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nin</action>
29 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nog</action>
30 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsd</action>
31 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsi</action>
32 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsq</action>
33 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.phr</action>
34 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.pin</action>
35 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.pog</action>
36 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psd</action>
37 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psi</action>
38 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psq</action>
21 39
22 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V</action> 40 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V</action>
23 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nhr</action> 41 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nhr</action>
24 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nin</action> 42 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nin</action>
25 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nog</action> 43 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nog</action>
92 <action type="move_file"> 110 <action type="move_file">
93 <source>human_V_prot</source> 111 <source>human_V_prot</source>
94 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination> 112 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
95 </action> 113 </action>
96 114
115
116 <action type="move_file">
117 <source>human_TR_V.nhr</source>
118 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
119 </action>
120 <action type="move_file">
121 <source>human_TR_V.nin</source>
122 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
123 </action>
124 <action type="move_file">
125 <source>human_TR_V.nog</source>
126 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
127 </action>
128 <action type="move_file">
129 <source>human_TR_V.nsd</source>
130 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
131 </action>
132 <action type="move_file">
133 <source>human_TR_V.nsi</source>
134 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
135 </action>
136 <action type="move_file">
137 <source>human_TR_V.nsq</source>
138 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
139 </action>
140 <action type="move_file">
141 <source>human_TR_V.phr</source>
142 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
143 </action>
144 <action type="move_file">
145 <source>human_TR_V.pin</source>
146 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
147 </action>
148 <action type="move_file">
149 <source>human_TR_V.pog</source>
150 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
151 </action>
152 <action type="move_file">
153 <source>human_TR_V.psd</source>
154 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
155 </action>
156 <action type="move_file">
157 <source>human_TR_V.psi</source>
158 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
159 </action>
160 <action type="move_file">
161 <source>human_TR_V.psq</source>
162 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
163 </action>
164
97 </actions> 165 </actions>
98 </install> 166 </install>
99 <readme> 167 <readme>
100 Downloads igBlast with the human_V internal data file. 168 Downloads igBlast with the human_V internal data file.
101 </readme> 169 </readme>