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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 </set_environment>
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5
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1
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6 <package name="igBlastn" version="1.0.0">
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0
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7 <install version="1.0">
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8 <actions>
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23
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9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
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14
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10 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
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11 </action>
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24
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12
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13
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14 <action type="move_directory_files">
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27
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15 <source_directory>ncbi-igblast-1.0.0</source_directory>
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28
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16 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory>
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24
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17 </action>
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18 <action type="set_environment">
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28
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19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
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24
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20 </action>
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21
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33
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22 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V</action>
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23 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nhr</action>
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24 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nin</action>
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25 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nog</action>
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26 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsd</action>
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27 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsi</action>
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28 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsq</action>
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29 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.phr</action>
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30 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pin</action>
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31 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pog</action>
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32 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psd</action>
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33 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psi</action>
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34 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psq</action>
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35 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V_prot</action>
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36
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27
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37 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
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38 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
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33
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39
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40 <action type="move_file">
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41 <source>human_V</source>
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42 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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43 </action>
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34
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44 <action type="move_file">
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45 <source>human_V.nhr</source>
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46 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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47 </action>
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48 <action type="move_file">
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49 <source>human_V.nin</source>
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50 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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51 </action>
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52 <action type="move_file">
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53 <source>human_V.nog</source>
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54 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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55 </action>
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56 <action type="move_file">
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57 <source>human_V.nsd</source>
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58 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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59 </action>
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60 <action type="move_file">
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61 <source>human_V.nsi</source>
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62 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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63 </action>
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64 <action type="move_file">
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65 <source>human_V.nsq</source>
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66 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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67 </action>
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68 <action type="move_file">
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69 <source>human_V.phr</source>
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70 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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71 </action>
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72 <action type="move_file">
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73 <source>human_V.pin</source>
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74 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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75 </action>
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76 <action type="move_file">
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77 <source>human_V.pog</source>
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78 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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79 </action>
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80 <action type="move_file">
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81 <source>human_V.psd</source>
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82 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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83 </action>
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84 <action type="move_file">
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85 <source>human_V.psi</source>
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86 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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87 </action>
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88 <action type="move_file">
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89 <source>human_V.psq</source>
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90 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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91 </action>
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92 <action type="move_file">
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93 <source>human_V_prot</source>
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94 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
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95 </action>
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22
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96
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0
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97 </actions>
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98 </install>
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99 <readme>
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19
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100 Downloads igBlast with the human_V internal data file.
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0
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101 </readme>
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102 </package>
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103 </tool_dependency>
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