Mercurial > repos > davidvanzessen > igblast_human

diff tool_dependencies.xml @ 0:a5954de04a3d draft

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author davidvanzessen
date Mon, 23 Sep 2013 10:00:34 -0400
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children 0ccde52e24a1
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Sep 23 10:00:34 2013 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+	<set_environment version="1.0">            
+    </set_environment>
+    
+	<package name="R" version="4.6.3"> 
+        <install version="1.0">
+            <actions>
+            	<action type="download_by_url">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action>
+                <action type="shell_command">tar -zxvf ncbi-igblast-1.0.0-x64-linux.tar.gz</action>
+                
+                <action type="set_environment">
+                	<environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+			Installs R with apt-get.
+        </readme>
+    </package>
+</tool_dependency>
+