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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 </set_environment>
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5
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1
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6 <package name="igBlastn" version="1.0.0">
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7 <install version="1.0">
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8 <actions>
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23
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9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
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14
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10 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
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11 </action>
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24
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12
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13
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14 <action type="move_directory_files">
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15 <source_directory>
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16 ncbi-igblast-1.0.0
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17 </source_directory>
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18 <destination_director>
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19 $INSTALL_DIR/nzbi-igblast-1.0.0
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20 </destination_director>
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21 </action>
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22 <action type="set_environment">
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23 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR</environment_variable>
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24 </action>
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25
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26 <action type="make_directory">
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27 $INSTALL_DIR/ncbi-igblast-1.0.0/internal_data
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28 </action>
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29 <action type="make_directory">
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30 $INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
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31 </action>
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22
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32
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20
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33
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24
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34 <action type="download_by_url">
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35 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V*
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36 </action>
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37 <action type="move_file">
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38 <source>
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39 human_V*
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40 </source>
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41 <destination>
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42 $INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
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43 </destination>
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44 </action>
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45
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46
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47 </actions>
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48 </install>
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49 <readme>
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50 Downloads igBlast with the human_V internal data file.
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51 </readme>
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52 </package>
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53 </tool_dependency>
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