|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <set_environment version="1.0">
|
|
|
4 </set_environment>
|
|
|
5
|
|
1
|
6 <package name="igBlastn" version="1.0.0">
|
|
0
|
7 <install version="1.0">
|
|
|
8 <actions>
|
|
23
|
9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
|
|
14
|
10 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
|
|
|
11 </action>
|
|
24
|
12
|
|
|
13
|
|
|
14 <action type="move_directory_files">
|
|
27
|
15 <source_directory>ncbi-igblast-1.0.0</source_directory>
|
|
28
|
16 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory>
|
|
24
|
17 </action>
|
|
|
18 <action type="set_environment">
|
|
28
|
19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
|
|
24
|
20 </action>
|
|
|
21
|
|
35
|
22 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.ndm.imgt</action>
|
|
|
23 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.ndm.kabat</action>
|
|
|
24 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.pdm.imgt</action>
|
|
|
25 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.pdm.kabat</action>
|
|
|
26
|
|
|
27 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nhr</action>
|
|
|
28 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nin</action>
|
|
|
29 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nog</action>
|
|
|
30 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsd</action>
|
|
|
31 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsi</action>
|
|
|
32 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsq</action>
|
|
|
33 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.phr</action>
|
|
|
34 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.pin</action>
|
|
|
35 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.pog</action>
|
|
|
36 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psd</action>
|
|
|
37 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psi</action>
|
|
|
38 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psq</action>
|
|
|
39
|
|
33
|
40 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V</action>
|
|
|
41 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nhr</action>
|
|
|
42 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nin</action>
|
|
|
43 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nog</action>
|
|
|
44 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsd</action>
|
|
|
45 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsi</action>
|
|
|
46 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsq</action>
|
|
|
47 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.phr</action>
|
|
|
48 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pin</action>
|
|
|
49 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pog</action>
|
|
|
50 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psd</action>
|
|
|
51 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psi</action>
|
|
|
52 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psq</action>
|
|
|
53 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V_prot</action>
|
|
|
54
|
|
27
|
55 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
|
|
|
56 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
|
|
33
|
57
|
|
|
58 <action type="move_file">
|
|
|
59 <source>human_V</source>
|
|
|
60 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
61 </action>
|
|
34
|
62 <action type="move_file">
|
|
|
63 <source>human_V.nhr</source>
|
|
|
64 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
65 </action>
|
|
|
66 <action type="move_file">
|
|
|
67 <source>human_V.nin</source>
|
|
|
68 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
69 </action>
|
|
|
70 <action type="move_file">
|
|
|
71 <source>human_V.nog</source>
|
|
|
72 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
73 </action>
|
|
|
74 <action type="move_file">
|
|
|
75 <source>human_V.nsd</source>
|
|
|
76 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
77 </action>
|
|
|
78 <action type="move_file">
|
|
|
79 <source>human_V.nsi</source>
|
|
|
80 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
81 </action>
|
|
|
82 <action type="move_file">
|
|
|
83 <source>human_V.nsq</source>
|
|
|
84 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
85 </action>
|
|
|
86 <action type="move_file">
|
|
|
87 <source>human_V.phr</source>
|
|
|
88 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
89 </action>
|
|
|
90 <action type="move_file">
|
|
|
91 <source>human_V.pin</source>
|
|
|
92 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
93 </action>
|
|
|
94 <action type="move_file">
|
|
|
95 <source>human_V.pog</source>
|
|
|
96 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
97 </action>
|
|
|
98 <action type="move_file">
|
|
|
99 <source>human_V.psd</source>
|
|
|
100 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
101 </action>
|
|
|
102 <action type="move_file">
|
|
|
103 <source>human_V.psi</source>
|
|
|
104 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
105 </action>
|
|
|
106 <action type="move_file">
|
|
|
107 <source>human_V.psq</source>
|
|
|
108 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
109 </action>
|
|
|
110 <action type="move_file">
|
|
|
111 <source>human_V_prot</source>
|
|
|
112 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
113 </action>
|
|
22
|
114
|
|
35
|
115
|
|
|
116 <action type="move_file">
|
|
36
|
117 <source>human.ndm.imgt</source>
|
|
|
118 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
119 </action>
|
|
|
120 <action type="move_file">
|
|
|
121 <source>human.ndm.kabat</source>
|
|
|
122 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
123 </action>
|
|
|
124 <action type="move_file">
|
|
|
125 <source>human.pdm.imgt</source>
|
|
|
126 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
127 </action>
|
|
|
128 <action type="move_file">
|
|
|
129 <source>human.pdm.kabat</source>
|
|
|
130 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
131 </action>
|
|
|
132
|
|
|
133 <action type="move_file">
|
|
35
|
134 <source>human_TR_V.nhr</source>
|
|
|
135 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
136 </action>
|
|
|
137 <action type="move_file">
|
|
|
138 <source>human_TR_V.nin</source>
|
|
|
139 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
140 </action>
|
|
|
141 <action type="move_file">
|
|
|
142 <source>human_TR_V.nog</source>
|
|
|
143 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
144 </action>
|
|
|
145 <action type="move_file">
|
|
|
146 <source>human_TR_V.nsd</source>
|
|
|
147 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
148 </action>
|
|
|
149 <action type="move_file">
|
|
|
150 <source>human_TR_V.nsi</source>
|
|
|
151 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
152 </action>
|
|
|
153 <action type="move_file">
|
|
|
154 <source>human_TR_V.nsq</source>
|
|
|
155 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
156 </action>
|
|
|
157 <action type="move_file">
|
|
|
158 <source>human_TR_V.phr</source>
|
|
|
159 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
160 </action>
|
|
|
161 <action type="move_file">
|
|
|
162 <source>human_TR_V.pin</source>
|
|
|
163 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
164 </action>
|
|
|
165 <action type="move_file">
|
|
|
166 <source>human_TR_V.pog</source>
|
|
|
167 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
168 </action>
|
|
|
169 <action type="move_file">
|
|
|
170 <source>human_TR_V.psd</source>
|
|
|
171 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
172 </action>
|
|
|
173 <action type="move_file">
|
|
|
174 <source>human_TR_V.psi</source>
|
|
|
175 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
176 </action>
|
|
|
177 <action type="move_file">
|
|
|
178 <source>human_TR_V.psq</source>
|
|
|
179 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
|
|
|
180 </action>
|
|
|
181
|
|
0
|
182 </actions>
|
|
|
183 </install>
|
|
|
184 <readme>
|
|
19
|
185 Downloads igBlast with the human_V internal data file.
|
|
0
|
186 </readme>
|
|
|
187 </package>
|
|
|
188 </tool_dependency>
|
