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1
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="package_velvet_1_2" version="1.2.08">
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5
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4 <repository changeset_revision="2d5ea3fd6508" name="package_velvet_1_2" owner="simon-gladman" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="velvetoptimiser_2_2_5" version="2.2.5">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">http://www.vicbioinformatics.com/VelvetOptimiser-2.2.5.tar.gz</action>
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10 <action type="move_directory_files">
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11 <source_directory>.</source_directory>
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12 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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13 </action>
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11
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14 <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/VelvetOptimiser.pl</action>
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15 <action type="set_environment">
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11
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16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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1
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17 </action>
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18 </actions>
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19 </install>
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20 </package>
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21 </tool_dependency>
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