Mercurial > repos > simon-gladman > velvet_optimiser_2_2_5
annotate tool_dependencies.xml @ 3:d790c804f62a draft
Added newest version of velvet tool dependency changeset code
| author | simon-gladman |
|---|---|
| date | Mon, 22 Jul 2013 21:09:24 -0400 |
| parents | 7a2387ada498 |
| children | 147411da6985 |
| rev | line source |
|---|---|
| 1 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="package_velvet_1_2" version="1.2.08"> | |
|
3
d790c804f62a
Added newest version of velvet tool dependency changeset code
simon-gladman
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changeset
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4 <repository changeset_revision="d16c72914c82" name="package_velvet_1_2" owner="simon-gladman" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 1 | 5 </package> |
| 6 <set_environment version="1.0"> | |
| 7 <environment_variable name="VELVET_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> | |
| 8 </set_environment> | |
| 9 <package name="velvetoptimiser_2_2_5" version="2.2.5"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | |
| 12 <action type="download_by_url">http://www.vicbioinformatics.com/VelvetOptimiser-2.2.5.tar.gz</action> | |
| 13 <action type="move_directory_files"> | |
| 14 <source_directory>.</source_directory> | |
| 15 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 16 </action> | |
| 17 <action type="set_environment"> | |
| 18 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 19 </action> | |
| 20 <action type="shell_command">chmod +x $INSTALL_DIR/bin/VelvetOptimiser.pl</action> | |
| 21 </actions> | |
| 22 </install> | |
| 23 </package> | |
| 24 </tool_dependency> |