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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="package_velvet_1_2" version="1.2.08">
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4 <repository changeset_revision="b38f6a7d6ca5" name="package_velvet_1_2" owner="simon-gladman" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <set_environment version="1.0">
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7 <environment_variable name="VELVET_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
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8 </set_environment>
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9 <package name="velvetoptimiser_2_2_5" version="2.2.5">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">http://www.vicbioinformatics.com/VelvetOptimiser-2.2.5.tar.gz</action>
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13 <action type="move_directory_files">
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14 <source_directory>.</source_directory>
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15 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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16 </action>
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17 <action type="set_environment">
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18 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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19 </action>
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20 <action type="shell_command">chmod +x $INSTALL_DIR/bin/VelvetOptimiser.pl</action>
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21 </actions>
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22 </install>
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23 </package>
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24 </tool_dependency>
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