diff tool_dependencies.xml @ 1:7a2387ada498 draft

Uploaded
author simon-gladman
date Tue, 16 Jul 2013 01:48:28 -0400
parents
children d790c804f62a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jul 16 01:48:28 2013 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="package_velvet_1_2" version="1.2.08">
+        <repository changeset_revision="b38f6a7d6ca5" name="package_velvet_1_2" owner="simon-gladman" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <set_environment version="1.0">
+        <environment_variable name="VELVET_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>   
+    </set_environment>
+    <package name="velvetoptimiser_2_2_5" version="2.2.5">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.vicbioinformatics.com/VelvetOptimiser-2.2.5.tar.gz</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+                <action type="shell_command">chmod +x $INSTALL_DIR/bin/VelvetOptimiser.pl</action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>