Mercurial > repos > iuc > package_circos_0_67_5

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planemo upload commit 003144051b526e4491cb4adcfc86aa0d14964c54
author iuc
date Tue, 12 Jan 2016 04:46:35 -0500
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="perl" version="5.18.1">
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4 <repository changeset_revision="6f144bd786a8" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="libgd" version="2.1.0">
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7 <repository changeset_revision="1d6054c3c159" name="package_libgd_2_1_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="circos" version="0.67.5">
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10 <install version="1.0">
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11 <actions>
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12 <action type="setup_perl_environment">
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13 <repository changeset_revision="6f144bd786a8" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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14 <package name="perl" version="5.18.1" />
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15 </repository>
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16 <repository changeset_revision="1d6054c3c159" name="package_libgd_2_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
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17 <package name="libgd" version="2.1.0" />
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18 </repository>
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19 <package>http://www.cpan.org/authors/id/Z/ZE/ZEFRAM/Carp-1.3301.tar.gz</package>
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20 <package>http://www.cpan.org/authors/id/G/GA/GARU/Clone-0.38.tar.gz</package>
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21 <package>http://www.cpan.org/authors/id/T/TL/TLINDEN/Config-General-2.56.tar.gz</package>
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22 <package>http://www.cpan.org/authors/id/S/SM/SMUELLER/PathTools-3.47.tar.gz</package>
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23 <package>http://www.cpan.org/authors/id/S/SM/SMUELLER/Data-Dumper-2.154.tar.gz</package>
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24 <package>http://www.cpan.org/authors/id/G/GA/GAAS/Digest-MD5-2.54.tar.gz</package>
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25 <package>http://www.cpan.org/authors/id/S/SM/SMUELLER/PathTools-3.47.tar.gz</package>
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26 <package>http://www.cpan.org/authors/id/D/DA/DAGOLDEN/File-Temp-0.2304.tar.gz</package>
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27 <package>http://www.cpan.org/authors/id/G/GA/GAAS/IO-String-1.08.tar.gz</package>
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28 <package>http://www.cpan.org/authors/id/M/MH/MHOSKEN/Font-TTF-1.05.tar.gz</package>
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29 <package>http://share.gruenings.eu/GD-2.56.tar.gz</package>
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30 <package sha256sum="93fdea2b24130dd748cd1dd8579513a4d46965b2e9869cf47649ab5a66053af1">https://depot.galaxyproject.org/software/Perl-Getopt-Long/Perl-Getopt-Long_2.45_src_all.tar.gz</package>
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32 <package>http://www.cpan.org/authors/id/R/RE/REHSACK/List-MoreUtils-0.404.tar.gz</package>
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33 <package>http://www.cpan.org/authors/id/P/PE/PEVANS/Scalar-List-Utils-1.41.tar.gz</package>
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34 <package>http://www.cpan.org/authors/id/G/GR/GROMMEL/Math-Round-0.07.tar.gz</package>
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35 <package>http://www.cpan.org/authors/id/A/AS/ASPINELLI/Math-VecStat-0.08.tar.gz</package>
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36 <package>http://www.cpan.org/authors/id/D/DO/DOY/Try-Tiny-0.22.tar.gz</package>
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37 <package>http://www.cpan.org/authors/id/Z/ZE/ZEFRAM/Module-Runtime-0.014.tar.gz</package>
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38 <package>http://www.cpan.org/authors/id/R/RJ/RJBS/Test-Fatal-0.014.tar.gz</package>
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39 <package>http://www.cpan.org/authors/id/T/TO/TOKUHIROM/Test-Requires-0.08.tar.gz</package>
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40 <package>http://www.cpan.org/authors/id/D/DR/DROLSKY/Module-Implementation-0.09.tar.gz</package>
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41 <package>http://www.cpan.org/authors/id/D/DR/DROLSKY/Params-Validate-1.17.tar.gz</package>
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43 <package>http://www.cpan.org/authors/id/S/SA/SANKO/Readonly-2.00.tar.gz</package>
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49 <package>http://www.cpan.org/authors/id/Z/ZE/ZEFRAM/Time-HiRes-1.9726.tar.gz</package>
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50 <package sha256sum="73d1e1e79f6cc04f976066e70106099df35be5534eceb5dfd2c1903ecf994acd">https://depot.galaxyproject.org/software/SVG-perl/SVG-perl_2.63_src_all.tar.gz</package>
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51 <package>https://cpan.metacpan.org/authors/id/A/AB/ABW/Math-Bezier-0.01.tar.gz</package>
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52 <package>https://cpan.metacpan.org/authors/id/S/SW/SWMCD/Set-IntSpan-1.19.tar.gz</package>
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53 </action>
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54 <action type="download_file">http://circos.ca/distribution/circos-0.67-5.tgz</action>
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55 <action type="shell_command">tar xzf circos-0.67-5.tgz</action>
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56 <action type="shell_command">sed -i 's/\/bin\/env/\/usr\/bin\/env/' circos-0.67-5/bin/circos circos-0.67-5/bin/gddiag</action>
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57 <action type="shell_command">cp circos-0.67-5/* $INSTALL_DIR -R</action>
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58 <action type="set_environment">
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59 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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60 </action>
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61 </actions>
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62 </install>
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63 <readme>
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64
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65 Circular visualization
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66 ======================
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67
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68 "Circos is a software package for visualizing data and information. It
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69 visualizes data in a circular layout — this makes Circos ideal for exploring
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70 relationships between objects or positions. There are other reasons why a
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71 circular layout is advantageous, not the least being the fact that it is
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72 attractive.
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73
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74 Circos is ideal for creating publication-quality infographics and illustrations
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75 with a high data-to-ink ratio, richly layered data and pleasant symmetries. You
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76 have fine control each element in the figure to tailor its focus points and
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77 detail to your audience."
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78
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79 </readme>
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80 </package>
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81 </tool_dependency>