Mercurial > repos > iuc > package_circos_0_67_5

annotate tool_dependencies.xml @ 10:e357464797ad draft

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author iuc
date Fri, 29 May 2015 17:03:37 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="perl" version="5.18.1">
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4 <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="libgd" version="2.1.0">
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7 <repository changeset_revision="88f469bfafbf" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="circos" version="0.67.5">
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10 <install version="1.0">
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11 <actions>
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12 <action type="set_environment_for_install">
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13 <repository changeset_revision="88f469bfafbf" name="package_libgd_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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14 <package name="libgd" version="2.1" />
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15 </repository>
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16 </action>
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18 <action type="setup_perl_environment">
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19 <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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20 <package name="perl" prior_installation_required="True" version="5.18.1" />
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21 </repository>
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22 <repository changeset_revision="88f469bfafbf" name="package_libgd_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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23 <package name="libgd" prior_installation_required="True" version="2.1" />
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24 </repository>
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25 <package>http://www.cpan.org/authors/id/Z/ZE/ZEFRAM/Carp-1.3301.tar.gz</package>
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27 <package>http://www.cpan.org/authors/id/T/TL/TLINDEN/Config-General-2.56.tar.gz</package>
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28 <package>http://www.cpan.org/authors/id/S/SM/SMUELLER/PathTools-3.47.tar.gz</package>
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38 <package>http://www.cpan.org/authors/id/R/RE/REHSACK/List-MoreUtils-0.404.tar.gz</package>
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58 <package>https://cpan.metacpan.org/authors/id/S/SW/SWMCD/Set-IntSpan-1.19.tar.gz</package>
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59 </action>
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60 <action type="download_file">http://circos.ca/distribution/circos-0.67-5.tgz</action>
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61 <action type="shell_command">tar xzf circos-0.67-5.tgz</action>
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62 <action type="shell_command">sed -i 's/\/bin\/env/\/usr\/bin\/env/' circos-0.67-5/bin/circos circos-0.67-5/bin/gddiag</action>
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63 <action type="shell_command">cp circos-0.67-5/* $INSTALL_DIR -R</action>
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64 <action type="set_environment">
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65 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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66 </action>
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67 </actions>
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68 </install>
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69 <readme>
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70
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71 Circular visualization
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72 ======================
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73
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74 "Circos is a software package for visualizing data and information. It
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75 visualizes data in a circular layout — this makes Circos ideal for exploring
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76 relationships between objects or positions. There are other reasons why a
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77 circular layout is advantageous, not the least being the fact that it is
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78 attractive.
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79
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80 Circos is ideal for creating publication-quality infographics and illustrations
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81 with a high data-to-ink ratio, richly layered data and pleasant symmetries. You
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82 have fine control each element in the figure to tailor its focus points and
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83 detail to your audience."
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84
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85 </readme>
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86 </package>
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87 </tool_dependency>