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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="perl" version="5.18.1">
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4 <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="circos" version="0.67.5">
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7 <install version="1.0">
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8 <actions>
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9 <action type="setup_perl_environment">
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10 <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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11 <package name="perl" version="5.18.1" />
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12 </repository>
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13 <package>http://www.cpan.org/authors/id/Z/ZE/ZEFRAM/Carp-1.3301.tar.gz</package>
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14 <package>http://www.cpan.org/authors/id/G/GA/GARU/Clone-0.38.tar.gz</package>
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15 <package>http://www.cpan.org/authors/id/T/TL/TLINDEN/Config-General-2.56.tar.gz</package>
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16 <package>http://www.cpan.org/authors/id/S/SM/SMUELLER/PathTools-3.47.tar.gz</package>
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17 <package>http://www.cpan.org/authors/id/S/SM/SMUELLER/Data-Dumper-2.154.tar.gz</package>
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18 <package>http://www.cpan.org/authors/id/G/GA/GAAS/Digest-MD5-2.54.tar.gz</package>
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19 <package>http://www.cpan.org/authors/id/S/SM/SMUELLER/PathTools-3.47.tar.gz</package>
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20 <package>http://www.cpan.org/authors/id/D/DA/DAGOLDEN/File-Temp-0.2304.tar.gz</package>
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21 <package>http://www.cpan.org/authors/id/G/GA/GAAS/IO-String-1.08.tar.gz</package>
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22 <package>http://www.cpan.org/authors/id/M/MH/MHOSKEN/Font-TTF-1.05.tar.gz</package>
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23 <package>http://www.cpan.org/authors/id/L/LD/LDS/GD-2.56.tar.gz</package>
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24 <package>http://www.cpan.org/authors/id/J/JV/JV/Getopt-Long-2.43.tar.gz</package>
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25 <package>http://www.cpan.org/authors/id/T/TO/TOBYINK/Exporter-Tiny-0.042.tar.gz</package>
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26 <package>http://www.cpan.org/authors/id/R/RE/REHSACK/List-MoreUtils-0.404.tar.gz</package>
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27 <package>http://www.cpan.org/authors/id/P/PE/PEVANS/Scalar-List-Utils-1.41.tar.gz</package>
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28 <package>http://www.cpan.org/authors/id/G/GR/GROMMEL/Math-Round-0.07.tar.gz</package>
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29 <package>http://www.cpan.org/authors/id/A/AS/ASPINELLI/Math-VecStat-0.08.tar.gz</package>
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30 <package>http://www.cpan.org/authors/id/D/DO/DOY/Try-Tiny-0.22.tar.gz</package>
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31 <package>http://www.cpan.org/authors/id/Z/ZE/ZEFRAM/Module-Runtime-0.014.tar.gz</package>
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32 <package>http://www.cpan.org/authors/id/R/RJ/RJBS/Test-Fatal-0.014.tar.gz</package>
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33 <package>http://www.cpan.org/authors/id/T/TO/TOKUHIROM/Test-Requires-0.08.tar.gz</package>
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34 <package>http://www.cpan.org/authors/id/D/DR/DROLSKY/Module-Implementation-0.09.tar.gz</package>
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35 <package>http://www.cpan.org/authors/id/D/DR/DROLSKY/Params-Validate-1.17.tar.gz</package>
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36 <package>http://www.cpan.org/authors/id/M/MA/MAREKR/Pod-Usage-1.64.tar.gz</package>
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37 <package>http://www.cpan.org/authors/id/S/SA/SANKO/Readonly-2.00.tar.gz</package>
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38 <package>http://www.cpan.org/authors/id/A/AB/ABIGAIL/Regexp-Common-2013031301.tar.gz</package>
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39 <package>http://www.cpan.org/authors/id/W/WR/WRW/Number-Format-1.73.tar.gz</package>
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40 <package>http://www.cpan.org/authors/id/J/JE/JETTERO/Statistics-Basic-1.6611.tar.gz</package>
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41 <package>http://www.cpan.org/authors/id/A/AM/AMS/Storable-2.51.tar.gz</package>
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42 <package>http://www.cpan.org/authors/id/S/SH/SHLOMIF/Text-Format-0.59.tar.gz</package>
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43 <package>http://www.cpan.org/authors/id/Z/ZE/ZEFRAM/Time-HiRes-1.9726.tar.gz</package>
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44 </action>
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45 <action type="download_by_url">http://circos.ca/distribution/circos-0.67-5.tgz</action>
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46 <action type="shell_command">sed -i 's/\/bin\/env/\/usr\/bin\/env/' bin/circos bin/gddiag</action>
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47 <action type="move_directory_files">
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48 <source_directory>.</source_directory>
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49 <destination_directory>$INSTALL_DIR</destination_directory>
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50 </action>
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51 <action type="set_environment">
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52 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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53 </action>
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54 </actions>
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55 </install>
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56 <readme>
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57 Circular visualization
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58 ======================
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59
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60 "Circos is a software package for visualizing data and information. It
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61 visualizes data in a circular layout — this makes Circos ideal for exploring
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62 relationships between objects or positions. There are other reasons why a
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63 circular layout is advantageous, not the least being the fact that it is
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64 attractive.
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65
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66 Circos is ideal for creating publication-quality infographics and illustrations
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67 with a high data-to-ink ratio, richly layered data and pleasant symmetries. You
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68 have fine control each element in the figure to tailor its focus points and
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69 detail to your audience."
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70 </readme>
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71 </package>
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72 </tool_dependency>
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