--- a/tool_dependencies.xml	Thu Mar 19 17:58:39 2015 -0400
+++ b/tool_dependencies.xml	Fri May 29 12:47:06 2015 -0400
@@ -13,6 +13,9 @@
                     <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="perl" version="5.18.1" />
                     </repository>
+                    <repository changeset_revision="979b30851e9a" name="package_libgd_2_1_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="libgd" version="2.1.0" />
+                    </repository>
                     <package>http://www.cpan.org/authors/id/Z/ZE/ZEFRAM/Carp-1.3301.tar.gz</package>
                     <package>http://www.cpan.org/authors/id/G/GA/GARU/Clone-0.38.tar.gz</package>
                     <package>http://www.cpan.org/authors/id/T/TL/TLINDEN/Config-General-2.56.tar.gz</package>
@@ -23,8 +26,8 @@
                     <package>http://www.cpan.org/authors/id/D/DA/DAGOLDEN/File-Temp-0.2304.tar.gz</package>
                     <package>http://www.cpan.org/authors/id/G/GA/GAAS/IO-String-1.08.tar.gz</package>
                     <package>http://www.cpan.org/authors/id/M/MH/MHOSKEN/Font-TTF-1.05.tar.gz</package>
-                    <package>http://www.cpan.org/authors/id/L/LD/LDS/GD-2.56.tar.gz</package>
-                    <package>http://www.cpan.org/authors/id/J/JV/JV/Getopt-Long-2.43.tar.gz</package>
+                    <package>http://share.gruenings.eu/GD-2.56.tar.gz</package>
+                    <package>http://www.cpan.org/authors/id/J/JV/JV/Getopt-Long-2.45.tar.gz</package>
                     <package>http://www.cpan.org/authors/id/T/TO/TOBYINK/Exporter-Tiny-0.042.tar.gz</package>
                     <package>http://www.cpan.org/authors/id/R/RE/REHSACK/List-MoreUtils-0.404.tar.gz</package>
                     <package>http://www.cpan.org/authors/id/P/PE/PEVANS/Scalar-List-Utils-1.41.tar.gz</package>
@@ -44,13 +47,14 @@
                     <package>http://www.cpan.org/authors/id/A/AM/AMS/Storable-2.51.tar.gz</package>
                     <package>http://www.cpan.org/authors/id/S/SH/SHLOMIF/Text-Format-0.59.tar.gz</package>
                     <package>http://www.cpan.org/authors/id/Z/ZE/ZEFRAM/Time-HiRes-1.9726.tar.gz</package>
+                    <package>http://www.cpan.org/authors/id/S/SZ/SZABGAB/SVG-2.63.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/A/AB/ABW/Math-Bezier-0.01.tar.gz</package>
+                    <package>https://cpan.metacpan.org/authors/id/S/SW/SWMCD/Set-IntSpan-1.19.tar.gz</package>
                 </action>
-                <action type="download_by_url">http://circos.ca/distribution/circos-0.67-5.tgz</action>
-                <action type="shell_command">sed -i 's/\/bin\/env/\/usr\/bin\/env/' bin/circos bin/gddiag</action>
-                <action type="move_directory_files">
-                    <source_directory>.</source_directory>
-                    <destination_directory>$INSTALL_DIR</destination_directory>
-                </action>
+                <action type="download_file">http://circos.ca/distribution/circos-0.67-5.tgz</action>
+                <action type="shell_command">tar xzf circos-0.67-5.tgz</action>
+                <action type="shell_command">sed -i 's/\/bin\/env/\/usr\/bin\/env/' circos-0.67-5/bin/circos circos-0.67-5/bin/gddiag</action>
+                <action type="shell_command">cp circos-0.67-5/* $INSTALL_DIR -R</action>
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                 </action>