Mercurial > repos > iuc > package_blast_plus_2_2_26

annotate tool_dependencies.xml @ 1:9ff9bfdcd04f draft

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Explicit BOOST package dependency
author peterjc
date Mon, 12 Aug 2013 06:02:46 -0400
parents 733eee977fb8
children 0e536576294c
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="boost" version="1.53.0">
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4 <repository changeset_revision="a72f8efe9201" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="blast+" version="2.2.26+">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action>
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10 <!-- populate the environment variables from the dependent repos -->
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11 <action type="set_environment_for_install">
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12 <repository changeset_revision="f5b13e56a321" name="package_boost_1_53" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
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13 <package name="boost" version="1.53.0" />
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14 </repository>
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15 </action>
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16 <action type="shell_command">cd c++ &amp;&amp; ./configure --with-boost=$BOOST_ROOT_DIR --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
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17 <action type="set_environment">
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18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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19 </action>
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20 </actions>
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21 </install>
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22 <readme>
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23 Downloads and compiles BLAST+ from the NCBI, which assumes you have
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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24 all the required build dependencies installed. See:
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25 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
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26 </readme>
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27 </package>
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28 </tool_dependency>