Mercurial > repos > iuc > package_blast_plus_2_2_26
diff tool_dependencies.xml @ 1:9ff9bfdcd04f draft
Explicit BOOST package dependency
| author | peterjc |
|---|---|
| date | Mon, 12 Aug 2013 06:02:46 -0400 |
| parents | 733eee977fb8 |
| children | 0e536576294c |
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--- a/tool_dependencies.xml Wed Aug 07 11:34:47 2013 -0400 +++ b/tool_dependencies.xml Mon Aug 12 06:02:46 2013 -0400 @@ -1,12 +1,21 @@ <?xml version="1.0"?> <tool_dependency> + <package name="boost" version="1.53.0"> + <repository changeset_revision="a72f8efe9201" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> <package name="blast+" version="2.2.26+"> <install version="1.0"> <actions> <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action> - <action type="shell_command">cd c++ && ./configure --prefix=$INSTALL_DIR && make && make install</action> + <!-- populate the environment variables from the dependent repos --> + <action type="set_environment_for_install"> + <repository changeset_revision="f5b13e56a321" name="package_boost_1_53" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="boost" version="1.53.0" /> + </repository> + </action> + <action type="shell_command">cd c++ && ./configure --with-boost=$BOOST_ROOT_DIR --prefix=$INSTALL_DIR && make && make install</action> <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> @@ -17,4 +26,3 @@ </readme> </package> </tool_dependency> -
