Mercurial > repos > iuc > package_blast_plus_2_2_26

annotate tool_dependencies.xml @ 0:733eee977fb8 draft

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Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository. Note this is known to fail to compile with recent BOOST libraries.
author peterjc
date Wed, 07 Aug 2013 11:34:47 -0400
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children 9ff9bfdcd04f
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733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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1 <?xml version="1.0"?>
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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2 <tool_dependency>
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3 <package name="blast+" version="2.2.26+">
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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4 <install version="1.0">
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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5 <actions>
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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6 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action>
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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7 <action type="shell_command">cd c++ &amp;&amp; ./configure --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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8 <action type="set_environment">
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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9 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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10 </action>
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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11 </actions>
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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12 </install>
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13 <readme>
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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14 Downloads and compiles BLAST+ from the NCBI, which assumes you have
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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15 all the required build dependencies installed. See:
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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16 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
733eee977fb8 Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository.
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17 </readme>
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18 </package>
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19 </tool_dependency>
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20