Mercurial > repos > iuc > package_blast_plus_2_2_26

comparison tool_dependencies.xml @ 1:9ff9bfdcd04f draft

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Explicit BOOST package dependency
author peterjc
date Mon, 12 Aug 2013 06:02:46 -0400
parents 733eee977fb8
children 0e536576294c
comparison
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0:733eee977fb8 1:9ff9bfdcd04f
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="boost" version="1.53.0">
4 <repository changeset_revision="a72f8efe9201" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package>
3 <package name="blast+" version="2.2.26+"> 6 <package name="blast+" version="2.2.26+">
4 <install version="1.0"> 7 <install version="1.0">
5 <actions> 8 <actions>
6 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action> 9 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action>
7 <action type="shell_command">cd c++ &amp;&amp; ./configure --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action> 10 <!-- populate the environment variables from the dependent repos -->
11 <action type="set_environment_for_install">
12 <repository changeset_revision="f5b13e56a321" name="package_boost_1_53" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
13 <package name="boost" version="1.53.0" />
14 </repository>
15 </action>
16 <action type="shell_command">cd c++ &amp;&amp; ./configure --with-boost=$BOOST_ROOT_DIR --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
8 <action type="set_environment"> 17 <action type="set_environment">
9 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
10 </action> 19 </action>
11 </actions> 20 </actions>
12 </install> 21 </install>
13 <readme> 22 <readme>
14 Downloads and compiles BLAST+ from the NCBI, which assumes you have 23 Downloads and compiles BLAST+ from the NCBI, which assumes you have
15 all the required build dependencies installed. See: 24 all the required build dependencies installed. See:
16 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download 25 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
17 </readme> 26 </readme>
18 </package> 27 </package>
19 </tool_dependency> 28 </tool_dependency>
20