Mercurial > repos > iuc > package_blast_plus_2_2_26

diff tool_dependencies.xml @ 0:733eee977fb8 draft

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Uploaded tool_dependency.xml previously bundled with ncbi_blast_plus repository. Note this is known to fail to compile with recent BOOST libraries.
author peterjc
date Wed, 07 Aug 2013 11:34:47 -0400
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children 9ff9bfdcd04f
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Aug 07 11:34:47 2013 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="blast+" version="2.2.26+">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action>
+                <action type="shell_command">cd c++ &amp;&amp; ./configure --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Downloads and compiles BLAST+ from the NCBI, which assumes you have
+all the required build dependencies installed. See:
+http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
+        </readme>
+    </package>
+</tool_dependency>
+