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planemo upload for repository https://github.com/brsynth/rrparser commit ed7fa4533be443a83f14dd931dcdf30806c170a7
author tduigou
date Wed, 02 Apr 2025 13:24:04 +0000
parents 2ec2fae2a58d
children
line wrap: on
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{
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                        "chromInfo": "\"/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
                        "dbkey": "\"?\"",
                        "rules": "{\"__current_case__\": 3, \"file\": {\"values\": [{\"id\": 8, \"src\": \"hda\"}]}, \"input_format\": \"csv\", \"type\": \"rules-file\"}"
                    },
                    "state": "ok",
                    "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): ['1.1.1.202', '2.3.1.40', 'NOEC', '1.2.3', '2.4.1\\n']\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 68 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n",
                    "stdout": "",
                    "tool_id": "rrparser",
                    "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): ['1.1.1.202', '2.3.1.40', 'NOEC', '1.2.3', '2.4.1\\n']\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 68 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n",
                    "tool_stdout": "",
                    "update_time": "2025-04-02T13:19:58.249593",
                    "user_email": "planemo@galaxyproject.org",
                    "user_id": "9e4e5a4b3a855398"
                },
                "status": "success",
                "test_index": 4,
                "time_seconds": 17.527034759521484,
                "tool_id": "rrparser",
                "tool_version": "2.7.0+galaxy2"
            },
            "has_data": true,
            "id": "rrparser-4"
        },
        {
            "data": {
                "inputs": {
                    "adv|input_scores_file": {
                        "id": "e518de1807107326",
                        "src": "hda"
                    },
                    "rules|file": {
                        "id": "1ecde2b521ddcb43",
                        "src": "hda"
                    },
                    "rules|type": "rules-file"
                },
                "job": {
                    "command_line": "python -m rrparser --rules_file '/tmp/tmpm3epclar/files/9/c/c/dataset_9cc4cc4e-4aa9-4f11-ba74-f94f9ff8bd58.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir \"${TMPDIR:-.}\" --outfile '/tmp/tmpm3epclar/job_working_directory/000/13/outputs/dataset_7b814b69-02aa-4a6a-87e9-df3c7506f8e0.dat' --scores '/tmp/tmpm3epclar/files/9/c/9/dataset_9c94b8d9-170b-42d3-be35-8ec09d2f651c.dat'",
                    "command_version": "",
                    "copied_from_job_id": null,
                    "create_time": "2025-04-02T13:20:08.972566",
                    "dependencies": [
                        {
                            "cacheable": false,
                            "dependency_resolver": {
                                "auto_init": true,
                                "auto_install": true,
                                "can_uninstall_dependencies": true,
                                "ensure_channels": "conda-forge,bioconda",
                                "model_class": "CondaDependencyResolver",
                                "prefix": "/home/rkhaled/miniconda3",
                                "read_only": false,
                                "resolver_type": "conda",
                                "resolves_simple_dependencies": true,
                                "use_local": false,
                                "versionless": false
                            },
                            "dependency_type": "conda",
                            "environment_path": "/home/rkhaled/miniconda3/envs/__rrparser@2.7.0",
                            "exact": true,
                            "model_class": "MergedCondaDependency",
                            "name": "rrparser",
                            "version": "2.7.0"
                        }
                    ],
                    "exit_code": 0,
                    "external_id": "177372",
                    "galaxy_version": "24.2",
                    "handler": null,
                    "history_id": "158df96eaa64fd08",
                    "id": "bec2ef2bb04a8edc",
                    "inputs": {
                        "adv|input_scores_file": {
                            "id": "e518de1807107326",
                            "src": "hda",
                            "uuid": "9c94b8d9-170b-42d3-be35-8ec09d2f651c"
                        },
                        "rules|file": {
                            "id": "1ecde2b521ddcb43",
                            "src": "hda",
                            "uuid": "9cc4cc4e-4aa9-4f11-ba74-f94f9ff8bd58"
                        }
                    },
                    "job_messages": [],
                    "job_metrics": [],
                    "job_runner_name": null,
                    "job_stderr": "",
                    "job_stdout": "",
                    "model_class": "Job",
                    "output_collections": {},
                    "outputs": {
                        "out_rules": {
                            "id": "bec2ef2bb04a8edc",
                            "src": "hda",
                            "uuid": "7b814b69-02aa-4a6a-87e9-df3c7506f8e0"
                        }
                    },
                    "params": {
                        "__input_ext": "\"input\"",
                        "adv": "{\"compress\": false, \"diameters\": [\"2\", \"4\", \"6\", \"8\", \"10\", \"12\", \"14\", \"16\"], \"input_conditional_ec\": {\"__current_case__\": 0, \"input_type\": \"no\"}, \"input_scores_file\": {\"values\": [{\"id\": 12, \"src\": \"hda\"}]}}",
                        "chromInfo": "\"/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
                        "dbkey": "\"?\"",
                        "rules": "{\"__current_case__\": 3, \"file\": {\"values\": [{\"id\": 11, \"src\": \"hda\"}]}, \"input_format\": \"csv\", \"type\": \"rules-file\"}"
                    },
                    "state": "ok",
                    "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 99 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[33mRule IDs {'foo'} found in scores file but not in results. Its score will not be used.\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n",
                    "stdout": "",
                    "tool_id": "rrparser",
                    "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 99 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[33mRule IDs {'foo'} found in scores file but not in results. Its score will not be used.\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n",
                    "tool_stdout": "",
                    "update_time": "2025-04-02T13:20:15.699056",
                    "user_email": "planemo@galaxyproject.org",
                    "user_id": "9e4e5a4b3a855398"
                },
                "status": "success",
                "test_index": 5,
                "time_seconds": 17.1466064453125,
                "tool_id": "rrparser",
                "tool_version": "2.7.0+galaxy2"
            },
            "has_data": true,
            "id": "rrparser-5"
        }
    ],
    "version": "0.1"
}