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planemo upload for repository https://github.com/brsynth/rrparser commit ed7fa4533be443a83f14dd931dcdf30806c170a7
author tduigou
date Wed, 02 Apr 2025 13:24:04 +0000
parents 2ec2fae2a58d
children
comparison
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8:2ec2fae2a58d 9:c320aba02826
1 { 1 {
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423 },
424 "state": "ok",
425 "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): ['1.1.1.202', '2.3.1.40', 'NOEC', '1.2.3', '2.4.1\\n']\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 68 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n",
426 "stdout": "",
427 "tool_id": "rrparser",
428 "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): ['1.1.1.202', '2.3.1.40', 'NOEC', '1.2.3', '2.4.1\\n']\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 68 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n",
429 "tool_stdout": "",
430 "update_time": "2025-04-02T13:19:58.249593",
431 "user_email": "planemo@galaxyproject.org",
432 "user_id": "9e4e5a4b3a855398"
433 },
434 "status": "success",
435 "test_index": 4,
436 "time_seconds": 17.527034759521484,
437 "tool_id": "rrparser",
438 "tool_version": "2.7.0+galaxy2"
439 },
440 "has_data": true,
441 "id": "rrparser-4"
442 },
443 {
444 "data": {
445 "inputs": {
446 "adv|input_scores_file": {
447 "id": "e518de1807107326",
448 "src": "hda"
449 },
450 "rules|file": {
451 "id": "1ecde2b521ddcb43",
452 "src": "hda"
453 },
454 "rules|type": "rules-file"
455 },
456 "job": {
457 "command_line": "python -m rrparser --rules_file '/tmp/tmpm3epclar/files/9/c/c/dataset_9cc4cc4e-4aa9-4f11-ba74-f94f9ff8bd58.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir \"${TMPDIR:-.}\" --outfile '/tmp/tmpm3epclar/job_working_directory/000/13/outputs/dataset_7b814b69-02aa-4a6a-87e9-df3c7506f8e0.dat' --scores '/tmp/tmpm3epclar/files/9/c/9/dataset_9c94b8d9-170b-42d3-be35-8ec09d2f651c.dat'",
458 "command_version": "",
459 "copied_from_job_id": null,
460 "create_time": "2025-04-02T13:20:08.972566",
461 "dependencies": [
462 {
463 "cacheable": false,
464 "dependency_resolver": {
465 "auto_init": true,
466 "auto_install": true,
467 "can_uninstall_dependencies": true,
468 "ensure_channels": "conda-forge,bioconda",
469 "model_class": "CondaDependencyResolver",
470 "prefix": "/home/rkhaled/miniconda3",
471 "read_only": false,
472 "resolver_type": "conda",
473 "resolves_simple_dependencies": true,
474 "use_local": false,
475 "versionless": false
476 },
477 "dependency_type": "conda",
478 "environment_path": "/home/rkhaled/miniconda3/envs/__rrparser@2.7.0",
479 "exact": true,
480 "model_class": "MergedCondaDependency",
481 "name": "rrparser",
482 "version": "2.7.0"
483 }
484 ],
485 "exit_code": 0,
486 "external_id": "177372",
487 "galaxy_version": "24.2",
488 "handler": null,
489 "history_id": "158df96eaa64fd08",
490 "id": "bec2ef2bb04a8edc",
491 "inputs": {
492 "adv|input_scores_file": {
493 "id": "e518de1807107326",
494 "src": "hda",
495 "uuid": "9c94b8d9-170b-42d3-be35-8ec09d2f651c"
496 },
497 "rules|file": {
498 "id": "1ecde2b521ddcb43",
499 "src": "hda",
500 "uuid": "9cc4cc4e-4aa9-4f11-ba74-f94f9ff8bd58"
501 }
502 },
503 "job_messages": [],
504 "job_metrics": [],
505 "job_runner_name": null,
506 "job_stderr": "",
507 "job_stdout": "",
508 "model_class": "Job",
509 "output_collections": {},
510 "outputs": {
511 "out_rules": {
512 "id": "bec2ef2bb04a8edc",
513 "src": "hda",
514 "uuid": "7b814b69-02aa-4a6a-87e9-df3c7506f8e0"
515 }
516 },
517 "params": {
518 "__input_ext": "\"input\"",
519 "adv": "{\"compress\": false, \"diameters\": [\"2\", \"4\", \"6\", \"8\", \"10\", \"12\", \"14\", \"16\"], \"input_conditional_ec\": {\"__current_case__\": 0, \"input_type\": \"no\"}, \"input_scores_file\": {\"values\": [{\"id\": 12, \"src\": \"hda\"}]}}",
520 "chromInfo": "\"/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
521 "dbkey": "\"?\"",
522 "rules": "{\"__current_case__\": 3, \"file\": {\"values\": [{\"id\": 11, \"src\": \"hda\"}]}, \"input_format\": \"csv\", \"type\": \"rules-file\"}"
523 },
524 "state": "ok",
525 "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 99 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[33mRule IDs {'foo'} found in scores file but not in results. Its score will not be used.\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n",
526 "stdout": "",
527 "tool_id": "rrparser",
528 "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 99 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[33mRule IDs {'foo'} found in scores file but not in results. Its score will not be used.\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n",
529 "tool_stdout": "",
530 "update_time": "2025-04-02T13:20:15.699056",
531 "user_email": "planemo@galaxyproject.org",
532 "user_id": "9e4e5a4b3a855398"
533 },
534 "status": "success",
535 "test_index": 5,
536 "time_seconds": 17.1466064453125,
537 "tool_id": "rrparser",
538 "tool_version": "2.7.0+galaxy2"
539 },
540 "has_data": true,
541 "id": "rrparser-5"
542 }
543 ],
9 "version": "0.1" 544 "version": "0.1"
10 } 545 }