Mercurial > repos > tduigou > rrparser
diff output.json @ 9:c320aba02826 draft
planemo upload for repository https://github.com/brsynth/rrparser commit ed7fa4533be443a83f14dd931dcdf30806c170a7
| author | tduigou |
|---|---|
| date | Wed, 02 Apr 2025 13:24:04 +0000 |
| parents | 2ec2fae2a58d |
| children |
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--- a/output.json Wed Apr 02 12:07:00 2025 +0000 +++ b/output.json Wed Apr 02 13:24:04 2025 +0000 @@ -3,8 +3,543 @@ "num_errors": 0, "num_failures": 0, "num_skips": 0, - "num_tests": 0 + "num_tests": 6 }, - "tests": [], + "tests": [ + { + "data": { + "inputs": {}, + "job": { + "command_line": "python -m rrparser --rules_file retrorules --rule-type 'retro' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir \"${TMPDIR:-.}\" --outfile '/tmp/tmpm3epclar/job_working_directory/000/1/outputs/dataset_8cf4442b-9d56-419c-b3e3-bd389549674c.dat'", + "command_version": "", + "copied_from_job_id": null, + "create_time": "2025-04-02T13:18:29.029554", + "dependencies": [], + "exit_code": 0, + "external_id": "176158", + "galaxy_version": "24.2", + "handler": null, + "history_id": "9e4e5a4b3a855398", + "id": "9e4e5a4b3a855398", + "inputs": {}, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + 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16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 68 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "tool_stdout": "", + "update_time": "2025-04-02T13:19:58.249593", + "user_email": "planemo@galaxyproject.org", + "user_id": "9e4e5a4b3a855398" + }, + "status": "success", + "test_index": 4, + "time_seconds": 17.527034759521484, + "tool_id": "rrparser", + "tool_version": "2.7.0+galaxy2" + }, + "has_data": true, + "id": "rrparser-4" + }, + { + "data": { + "inputs": { + "adv|input_scores_file": { + "id": "e518de1807107326", + "src": "hda" + }, + "rules|file": { + "id": "1ecde2b521ddcb43", + "src": "hda" + }, + "rules|type": "rules-file" + }, + "job": { + "command_line": "python -m rrparser --rules_file '/tmp/tmpm3epclar/files/9/c/c/dataset_9cc4cc4e-4aa9-4f11-ba74-f94f9ff8bd58.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir \"${TMPDIR:-.}\" --outfile '/tmp/tmpm3epclar/job_working_directory/000/13/outputs/dataset_7b814b69-02aa-4a6a-87e9-df3c7506f8e0.dat' --scores '/tmp/tmpm3epclar/files/9/c/9/dataset_9c94b8d9-170b-42d3-be35-8ec09d2f651c.dat'", + "command_version": "", + "copied_from_job_id": null, + "create_time": "2025-04-02T13:20:08.972566", + "dependencies": [ + { + "cacheable": false, + "dependency_resolver": { + "auto_init": true, + "auto_install": true, + "can_uninstall_dependencies": true, + "ensure_channels": "conda-forge,bioconda", + "model_class": "CondaDependencyResolver", + "prefix": "/home/rkhaled/miniconda3", + "read_only": false, + "resolver_type": "conda", + "resolves_simple_dependencies": true, + "use_local": false, + "versionless": false + }, + "dependency_type": "conda", + "environment_path": "/home/rkhaled/miniconda3/envs/__rrparser@2.7.0", + "exact": true, + "model_class": "MergedCondaDependency", + "name": "rrparser", + "version": "2.7.0" + } + ], + "exit_code": 0, + "external_id": "177372", + "galaxy_version": "24.2", + "handler": null, + "history_id": "158df96eaa64fd08", + "id": "bec2ef2bb04a8edc", + "inputs": { + "adv|input_scores_file": { + "id": "e518de1807107326", + "src": "hda", + "uuid": "9c94b8d9-170b-42d3-be35-8ec09d2f651c" + }, + "rules|file": { + "id": "1ecde2b521ddcb43", + "src": "hda", + "uuid": "9cc4cc4e-4aa9-4f11-ba74-f94f9ff8bd58" + } + }, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + "output_collections": {}, + "outputs": { + "out_rules": { + "id": "bec2ef2bb04a8edc", + "src": "hda", + "uuid": "7b814b69-02aa-4a6a-87e9-df3c7506f8e0" + } + }, + "params": { + "__input_ext": "\"input\"", + "adv": "{\"compress\": false, \"diameters\": [\"2\", \"4\", \"6\", \"8\", \"10\", \"12\", \"14\", \"16\"], \"input_conditional_ec\": {\"__current_case__\": 0, \"input_type\": \"no\"}, \"input_scores_file\": {\"values\": [{\"id\": 12, \"src\": \"hda\"}]}}", + "chromInfo": "\"/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "dbkey": "\"?\"", + "rules": "{\"__current_case__\": 3, \"file\": {\"values\": [{\"id\": 11, \"src\": \"hda\"}]}, \"input_format\": \"csv\", \"type\": \"rules-file\"}" + }, + "state": "ok", + "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 99 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[33mRule IDs {'foo'} found in scores file but not in results. Its score will not be used.\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "stdout": "", + "tool_id": "rrparser", + "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 99 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[33mRule IDs {'foo'} found in scores file but not in results. Its score will not be used.\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "tool_stdout": "", + "update_time": "2025-04-02T13:20:15.699056", + "user_email": "planemo@galaxyproject.org", + "user_id": "9e4e5a4b3a855398" + }, + "status": "success", + "test_index": 5, + "time_seconds": 17.1466064453125, + "tool_id": "rrparser", + "tool_version": "2.7.0+galaxy2" + }, + "has_data": true, + "id": "rrparser-5" + } + ], "version": "0.1" } \ No newline at end of file