Mercurial > repos > tduigou > rrparser
changeset 9:c320aba02826 draft
planemo upload for repository https://github.com/brsynth/rrparser commit ed7fa4533be443a83f14dd931dcdf30806c170a7
| author | tduigou |
|---|---|
| date | Wed, 02 Apr 2025 13:24:04 +0000 |
| parents | 2ec2fae2a58d |
| children | 3449d7bfee20 |
| files | output.html output.json rrparser.xml |
| diffstat | 3 files changed, 539 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/output.html Wed Apr 02 12:07:00 2025 +0000 +++ b/output.html Wed Apr 02 13:24:04 2025 +0000 @@ -285,7 +285,7 @@ var md = window.markdownit({ html: true, }); - target.innerHTML = md.render(atob('IyMgVGVzdCBTdW1tYXJ5CgoKfCBUZXN0IFN0YXRlIHwgQ291bnQgfAp8IC0tLS0tLS0tLS0gfCAtLS0tLSB8CnwgVG90YWwgICAgICB8IDAgfAp8IFBhc3NlZCAgICAgfCAwIHwKfCBFcnJvciAgICAgIHwgMCB8CnwgRmFpbHVyZSAgICB8IDAgfAp8IFNraXBwZWQgICAgfCAwIHwKCgo=')); + target.innerHTML = md.render(atob('## Test Summary

<div class="progress">
  <div class="progress-bar progress-bar-success" style="width: 100.0%" aria-valuenow="6" aria-valuemin="0" aria-valuemax="6" data-toggle="tooltip" title="6 Passed">
  </div>
  <div class="progress-bar progress-bar-warning" style="width: 0.0%" aria-valuenow="0" aria-valuemin="0" aria-valuemax="6" data-toggle="tooltip" title="0 Skipped">
  </div>
  <div class="progress-bar progress-bar-danger" style="width: 0.0%" aria-valuenow="0" aria-valuemin="0" aria-valuemax="6" title="0 Failed or Errored">
  </div>
</div>

| Test State | Count |
| ---------- | ----- |
| Total      | 6 |
| Passed     | 6 |
| Error      | 0 |
| Failure    | 0 |
| Skipped    | 0 |


<details ><summary>Passed Tests</summary>

* <details class="rcorners light-green"><summary class="light-green">&#9989; rrparser (Test # 1)</summary><div class="padded">

    **Command Line:**

    * ```console
      python -m rrparser --rules_file retrorules --rule-type 'retro' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir "${TMPDIR:-.}" --outfile '/tmp/tmpm3epclar/job_working_directory/000/1/outputs/dataset_8cf4442b-9d56-419c-b3e3-bd389549674c.dat'
      ```
    **Exit Code:**

    * ```console
      0
      ```
    **Standard Error:**

    * ```console
      [32m
      rrparser 2.6.0
      [0m
      [32mDownloading retrorules file...[0m
      [32mFiltering rules:[0m
      [32m -> EC numbers (not in): [][0m
      [32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16][0m
      [32m -> Rule types: retro[0m
      [32m[0m
      [32m=> 234384 rules found[0m
      [32m[0m
      [32mWriting results...[0m

      ```
    **Traceback:**

    * ```console
      
      ```
   **Job Parameters:**

   *   | Job parameter | Parameter value |
       | ------------- | --------------- |
       | rules | ` {"__current_case__": 0, "type": "retro"} ` |
       | adv | ` {"compress": false, "diameters": ["2", "4", "6", "8", "10", "12", "14", "16"], "input_conditional_ec": {"__current_case__": 0, "input_type": "no"}, "input_scores_file": null} ` |
       | chromInfo | ` "/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len" ` |
       | dbkey | ` "?" ` |
       | \_\_input\_ext | ` "input" ` |



    </div></details>


* <details class="rcorners light-green"><summary class="light-green">&#9989; rrparser (Test # 2)</summary><div class="padded">

    **Command Line:**

    * ```console
      python -m rrparser --rules_file retrorules --rule-type 'retro' --diameters '2,4,6' --output-format csv --rules-dir "${TMPDIR:-.}" --outfile '/tmp/tmpm3epclar/job_working_directory/000/2/outputs/dataset_2f780503-a4a1-4425-abc9-f3221ad92ea6.dat'
      ```
    **Exit Code:**

    * ```console
      0
      ```
    **Standard Error:**

    * ```console
      [32m
      rrparser 2.6.0
      [0m
      [32mFiltering rules:[0m
      [32m -> EC numbers (not in): [][0m
      [32m -> Diameters: [2, 4, 6][0m
      [32m -> Rule types: retro[0m
      [32m[0m
      [32m=> 87894 rules found[0m
      [32m[0m
      [32mWriting results...[0m

      ```
    **Traceback:**

    * ```console
      
      ```
   **Job Parameters:**

   *   | Job parameter | Parameter value |
       | ------------- | --------------- |
       | rules | ` {"__current_case__": 0, "type": "retro"} ` |
       | adv | ` {"compress": false, "diameters": ["2", "4", "6"], "input_conditional_ec": {"__current_case__": 0, "input_type": "no"}, "input_scores_file": null} ` |
       | chromInfo | ` "/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len" ` |
       | dbkey | ` "?" ` |
       | \_\_input\_ext | ` "input" ` |



    </div></details>


* <details class="rcorners light-green"><summary class="light-green">&#9989; rrparser (Test # 3)</summary><div class="padded">

    **Command Line:**

    * ```console
      python -m rrparser --rules_file '/tmp/tmpm3epclar/files/6/f/0/dataset_6f0d32d1-db1c-49fa-91c3-75ccd1396a8a.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir "${TMPDIR:-.}" --outfile '/tmp/tmpm3epclar/job_working_directory/000/4/outputs/dataset_e2d800c7-b383-4f51-8327-1a4cd12ab8f3.dat'
      ```
    **Exit Code:**

    * ```console
      0
      ```
    **Standard Error:**

    * ```console
      [32m
      rrparser 2.6.0
      [0m
      [32mFiltering rules:[0m
      [32m -> EC numbers (not in): [][0m
      [32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16][0m
      [32m -> Rule types: all[0m
      [32m[0m
      [32m=> 99 rules found[0m
      [32m[0m
      [32mWriting results...[0m

      ```
    **Traceback:**

    * ```console
      
      ```
   **Job Parameters:**

   *   | Job parameter | Parameter value |
       | ------------- | --------------- |
       | rules | ` {"__current_case__": 3, "file": {"values": [{"id": 3, "src": "hda"}]}, "input_format": "csv", "type": "rules-file"} ` |
       | adv | ` {"compress": false, "diameters": ["2", "4", "6", "8", "10", "12", "14", "16"], "input_conditional_ec": {"__current_case__": 0, "input_type": "no"}, "input_scores_file": null} ` |
       | chromInfo | ` "/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len" ` |
       | dbkey | ` "?" ` |
       | \_\_input\_ext | ` "input" ` |



    </div></details>


* <details class="rcorners light-green"><summary class="light-green">&#9989; rrparser (Test # 4)</summary><div class="padded">

    **Command Line:**

    * ```console
      python -m rrparser --rules_file '/tmp/tmpm3epclar/files/5/2/8/dataset_5289c0a4-efb2-4b52-b8a0-a793e2f2eefe.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir "${TMPDIR:-.}" --outfile '/tmp/tmpm3epclar/job_working_directory/000/7/outputs/dataset_982bef6f-5b22-44b6-abd4-36a81896797b.dat' --ec '/tmp/tmpm3epclar/files/8/0/9/dataset_80995b8a-0c9b-4ef0-8ad6-07eb42b400d5.dat'
      ```
    **Exit Code:**

    * ```console
      0
      ```
    **Standard Error:**

    * ```console
      [32m
      rrparser 2.6.0
      [0m
      [32mFiltering rules:[0m
      [32m -> EC numbers (in): ['1.1.1.202', '2.3.1.40', 'NOEC', '1.2.3', '2.4.1\n'][0m
      [32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16][0m
      [32m -> Rule types: all[0m
      [32m[0m
      [32m=> 31 rules found[0m
      [32m[0m
      [32mWriting results...[0m

      ```
    **Traceback:**

    * ```console
      
      ```
   **Job Parameters:**

   *   | Job parameter | Parameter value |
       | ------------- | --------------- |
       | rules | ` {"__current_case__": 3, "file": {"values": [{"id": 5, "src": "hda"}]}, "input_format": "csv", "type": "rules-file"} ` |
       | adv | ` {"compress": false, "diameters": ["2", "4", "6", "8", "10", "12", "14", "16"], "input_conditional_ec": {"__current_case__": 1, "input_ec_in": {"values": [{"id": 6, "src": "hda"}]}, "input_type": "in"}, "input_scores_file": null} ` |
       | chromInfo | ` "/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len" ` |
       | dbkey | ` "?" ` |
       | \_\_input\_ext | ` "input" ` |



    </div></details>


* <details class="rcorners light-green"><summary class="light-green">&#9989; rrparser (Test # 5)</summary><div class="padded">

    **Command Line:**

    * ```console
      python -m rrparser --rules_file '/tmp/tmpm3epclar/files/a/3/4/dataset_a348e61f-9252-4235-bd19-a9a9055b3ed9.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir "${TMPDIR:-.}" --outfile '/tmp/tmpm3epclar/job_working_directory/000/10/outputs/dataset_aa8ef57c-61dd-4229-a390-ac9db19b9df1.dat' --ecx '/tmp/tmpm3epclar/files/6/a/a/dataset_6aad8801-3891-438c-9a0d-8ae38e74ffc6.dat'
      ```
    **Exit Code:**

    * ```console
      0
      ```
    **Standard Error:**

    * ```console
      [32m
      rrparser 2.6.0
      [0m
      [32mFiltering rules:[0m
      [32m -> EC numbers (not in): ['1.1.1.202', '2.3.1.40', 'NOEC', '1.2.3', '2.4.1\n'][0m
      [32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16][0m
      [32m -> Rule types: all[0m
      [32m[0m
      [32m=> 68 rules found[0m
      [32m[0m
      [32mWriting results...[0m

      ```
    **Traceback:**

    * ```console
      
      ```
   **Job Parameters:**

   *   | Job parameter | Parameter value |
       | ------------- | --------------- |
       | rules | ` {"__current_case__": 3, "file": {"values": [{"id": 8, "src": "hda"}]}, "input_format": "csv", "type": "rules-file"} ` |
       | adv | ` {"compress": false, "diameters": ["2", "4", "6", "8", "10", "12", "14", "16"], "input_conditional_ec": {"__current_case__": 2, "input_ec_out": {"values": [{"id": 9, "src": "hda"}]}, "input_type": "out"}, "input_scores_file": null} ` |
       | chromInfo | ` "/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len" ` |
       | dbkey | ` "?" ` |
       | \_\_input\_ext | ` "input" ` |



    </div></details>


* <details class="rcorners light-green"><summary class="light-green">&#9989; rrparser (Test # 6)</summary><div class="padded">

    **Command Line:**

    * ```console
      python -m rrparser --rules_file '/tmp/tmpm3epclar/files/9/c/c/dataset_9cc4cc4e-4aa9-4f11-ba74-f94f9ff8bd58.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir "${TMPDIR:-.}" --outfile '/tmp/tmpm3epclar/job_working_directory/000/13/outputs/dataset_7b814b69-02aa-4a6a-87e9-df3c7506f8e0.dat' --scores '/tmp/tmpm3epclar/files/9/c/9/dataset_9c94b8d9-170b-42d3-be35-8ec09d2f651c.dat'
      ```
    **Exit Code:**

    * ```console
      0
      ```
    **Standard Error:**

    * ```console
      [32m
      rrparser 2.6.0
      [0m
      [32mFiltering rules:[0m
      [32m -> EC numbers (not in): [][0m
      [32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16][0m
      [32m -> Rule types: all[0m
      [32m[0m
      [32m=> 99 rules found[0m
      [32m[0m
      [33mRule IDs {'foo'} found in scores file but not in results. Its score will not be used.[0m
      [32mWriting results...[0m

      ```
    **Traceback:**

    * ```console
      
      ```
   **Job Parameters:**

   *   | Job parameter | Parameter value |
       | ------------- | --------------- |
       | rules | ` {"__current_case__": 3, "file": {"values": [{"id": 11, "src": "hda"}]}, "input_format": "csv", "type": "rules-file"} ` |
       | adv | ` {"compress": false, "diameters": ["2", "4", "6", "8", "10", "12", "14", "16"], "input_conditional_ec": {"__current_case__": 0, "input_type": "no"}, "input_scores_file": {"values": [{"id": 12, "src": "hda"}]}} ` |
       | chromInfo | ` "/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len" ` |
       | dbkey | ` "?" ` |
       | \_\_input\_ext | ` "input" ` |



    </div></details>


</details>
')); </script> </body> </html> \ No newline at end of file
--- a/output.json Wed Apr 02 12:07:00 2025 +0000 +++ b/output.json Wed Apr 02 13:24:04 2025 +0000 @@ -3,8 +3,543 @@ "num_errors": 0, "num_failures": 0, "num_skips": 0, - "num_tests": 0 + "num_tests": 6 }, - "tests": [], + "tests": [ + { + "data": { + "inputs": {}, + "job": { + "command_line": "python -m rrparser --rules_file retrorules --rule-type 'retro' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir \"${TMPDIR:-.}\" --outfile '/tmp/tmpm3epclar/job_working_directory/000/1/outputs/dataset_8cf4442b-9d56-419c-b3e3-bd389549674c.dat'", + "command_version": "", + "copied_from_job_id": null, + "create_time": "2025-04-02T13:18:29.029554", + "dependencies": [], + "exit_code": 0, + "external_id": "176158", + "galaxy_version": "24.2", + "handler": null, + "history_id": "9e4e5a4b3a855398", + "id": "9e4e5a4b3a855398", + "inputs": {}, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + "output_collections": {}, + "outputs": { + "out_rules": { + "id": "9e4e5a4b3a855398", + "src": "hda", + "uuid": "8cf4442b-9d56-419c-b3e3-bd389549674c" + } + }, + "params": { + "__input_ext": "\"input\"", + "adv": "{\"compress\": false, \"diameters\": [\"2\", \"4\", \"6\", \"8\", \"10\", \"12\", \"14\", \"16\"], \"input_conditional_ec\": {\"__current_case__\": 0, \"input_type\": \"no\"}, \"input_scores_file\": null}", + "chromInfo": "\"/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "dbkey": "\"?\"", + "rules": "{\"__current_case__\": 0, \"type\": \"retro\"}" + }, + "state": "ok", + "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mDownloading retrorules file...\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: retro\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 234384 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "stdout": "", + "tool_id": "rrparser", + "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mDownloading retrorules file...\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: retro\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 234384 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "tool_stdout": "", + "update_time": "2025-04-02T13:18:52.887632", + "user_email": "planemo@galaxyproject.org", + "user_id": "9e4e5a4b3a855398" + }, + "status": "success", + "test_index": 0, + "time_seconds": 25.15486192703247, + "tool_id": "rrparser", + "tool_version": "2.7.0+galaxy2" + }, + "has_data": true, + "id": "rrparser-0" + }, + { + "data": { + "inputs": { + "adv|diameters": [ + "2", + "4", + "6" + ] + }, + "job": { + "command_line": "python -m rrparser --rules_file retrorules --rule-type 'retro' --diameters '2,4,6' --output-format csv --rules-dir \"${TMPDIR:-.}\" --outfile '/tmp/tmpm3epclar/job_working_directory/000/2/outputs/dataset_2f780503-a4a1-4425-abc9-f3221ad92ea6.dat'", + "command_version": "", + "copied_from_job_id": null, + "create_time": "2025-04-02T13:18:54.274131", + "dependencies": [ + { + "cacheable": false, + "dependency_resolver": { + "auto_init": true, + "auto_install": true, + "can_uninstall_dependencies": true, + "ensure_channels": "conda-forge,bioconda", + "model_class": "CondaDependencyResolver", + "prefix": "/home/rkhaled/miniconda3", + "read_only": false, + "resolver_type": "conda", + "resolves_simple_dependencies": true, + "use_local": false, + "versionless": false + }, + "dependency_type": "conda", + "environment_path": "/home/rkhaled/miniconda3/envs/__rrparser@2.7.0", + "exact": true, + "model_class": "MergedCondaDependency", + "name": "rrparser", + "version": "2.7.0" + } + ], + "exit_code": 0, + "external_id": "176359", + "galaxy_version": "24.2", + "handler": null, + "history_id": "1ef788f1e3118195", + "id": "1ef788f1e3118195", + "inputs": {}, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + "output_collections": {}, + "outputs": { + "out_rules": { + "id": "1ef788f1e3118195", + "src": "hda", + "uuid": "2f780503-a4a1-4425-abc9-f3221ad92ea6" + } + }, + "params": { + "__input_ext": "\"input\"", + "adv": "{\"compress\": false, \"diameters\": [\"2\", \"4\", \"6\"], \"input_conditional_ec\": {\"__current_case__\": 0, \"input_type\": \"no\"}, \"input_scores_file\": null}", + "chromInfo": "\"/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "dbkey": "\"?\"", + "rules": "{\"__current_case__\": 0, \"type\": \"retro\"}" + }, + "state": "ok", + "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6]\u001b[0m\n\u001b[32m -> Rule types: retro\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 87894 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "stdout": "", + "tool_id": "rrparser", + "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6]\u001b[0m\n\u001b[32m -> Rule types: retro\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 87894 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "tool_stdout": "", + "update_time": "2025-04-02T13:19:05.424911", + "user_email": "planemo@galaxyproject.org", + "user_id": "9e4e5a4b3a855398" + }, + "status": "success", + "test_index": 1, + "time_seconds": 11.61790680885315, + "tool_id": "rrparser", + "tool_version": "2.7.0+galaxy2" + }, + "has_data": true, + "id": "rrparser-1" + }, + { + "data": { + "inputs": { + "rules|file": { + "id": "cb64eeec13fd8bed", + "src": "hda" + }, + "rules|type": "rules-file" + }, + "job": { + "command_line": "python -m rrparser --rules_file '/tmp/tmpm3epclar/files/6/f/0/dataset_6f0d32d1-db1c-49fa-91c3-75ccd1396a8a.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir \"${TMPDIR:-.}\" --outfile '/tmp/tmpm3epclar/job_working_directory/000/4/outputs/dataset_e2d800c7-b383-4f51-8327-1a4cd12ab8f3.dat'", + "command_version": "", + "copied_from_job_id": null, + "create_time": "2025-04-02T13:19:15.849598", + "dependencies": [ + { + "cacheable": false, + "dependency_resolver": { + "auto_init": true, + "auto_install": true, + "can_uninstall_dependencies": true, + "ensure_channels": "conda-forge,bioconda", + "model_class": "CondaDependencyResolver", + "prefix": "/home/rkhaled/miniconda3", + "read_only": false, + "resolver_type": "conda", + "resolves_simple_dependencies": true, + "use_local": false, + "versionless": false + }, + "dependency_type": "conda", + "environment_path": "/home/rkhaled/miniconda3/envs/__rrparser@2.7.0", + "exact": true, + "model_class": "MergedCondaDependency", + "name": "rrparser", + "version": "2.7.0" + } + ], + "exit_code": 0, + "external_id": "176593", + "galaxy_version": "24.2", + "handler": null, + "history_id": "cb64eeec13fd8bed", + "id": "9df58a1b3ccadf66", + "inputs": { + "rules|file": { + "id": "cb64eeec13fd8bed", + "src": "hda", + "uuid": "6f0d32d1-db1c-49fa-91c3-75ccd1396a8a" + } + }, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + "output_collections": {}, + "outputs": { + "out_rules": { + "id": "9df58a1b3ccadf66", + "src": "hda", + "uuid": "e2d800c7-b383-4f51-8327-1a4cd12ab8f3" + } + }, + "params": { + "__input_ext": "\"input\"", + "adv": "{\"compress\": false, \"diameters\": [\"2\", \"4\", \"6\", \"8\", \"10\", \"12\", \"14\", \"16\"], \"input_conditional_ec\": {\"__current_case__\": 0, \"input_type\": \"no\"}, \"input_scores_file\": null}", + "chromInfo": "\"/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "dbkey": "\"?\"", + "rules": "{\"__current_case__\": 3, \"file\": {\"values\": [{\"id\": 3, \"src\": \"hda\"}]}, \"input_format\": \"csv\", \"type\": \"rules-file\"}" + }, + "state": "ok", + "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 99 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "stdout": "", + "tool_id": "rrparser", + "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 99 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "tool_stdout": "", + "update_time": "2025-04-02T13:19:23.280174", + "user_email": "planemo@galaxyproject.org", + "user_id": "9e4e5a4b3a855398" + }, + "status": "success", + "test_index": 2, + "time_seconds": 17.598353147506714, + "tool_id": "rrparser", + "tool_version": "2.7.0+galaxy2" + }, + "has_data": true, + "id": "rrparser-2" + }, + { + "data": { + "inputs": { + "adv|input_conditional_ec|input_ec_in": { + "id": "158df96eaa64fd08", + "src": "hda" + }, + "adv|input_conditional_ec|input_type": "in", + "rules|file": { + "id": "9b2f4e10cc6dd033", + "src": "hda" + }, + "rules|type": "rules-file" + }, + "job": { + "command_line": "python -m rrparser --rules_file '/tmp/tmpm3epclar/files/5/2/8/dataset_5289c0a4-efb2-4b52-b8a0-a793e2f2eefe.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir \"${TMPDIR:-.}\" --outfile '/tmp/tmpm3epclar/job_working_directory/000/7/outputs/dataset_982bef6f-5b22-44b6-abd4-36a81896797b.dat' --ec '/tmp/tmpm3epclar/files/8/0/9/dataset_80995b8a-0c9b-4ef0-8ad6-07eb42b400d5.dat'", + "command_version": "", + "copied_from_job_id": null, + "create_time": "2025-04-02T13:19:33.850122", + "dependencies": [ + { + "cacheable": false, + "dependency_resolver": { + "auto_init": true, + "auto_install": true, + "can_uninstall_dependencies": true, + "ensure_channels": "conda-forge,bioconda", + "model_class": "CondaDependencyResolver", + "prefix": "/home/rkhaled/miniconda3", + "read_only": false, + "resolver_type": "conda", + "resolves_simple_dependencies": true, + "use_local": false, + "versionless": false + }, + "dependency_type": "conda", + "environment_path": "/home/rkhaled/miniconda3/envs/__rrparser@2.7.0", + "exact": true, + "model_class": "MergedCondaDependency", + "name": "rrparser", + "version": "2.7.0" + } + ], + "exit_code": 0, + "external_id": "176844", + "galaxy_version": "24.2", + "handler": null, + "history_id": "9df58a1b3ccadf66", + "id": "36e3846a4c0fca27", + "inputs": { + "adv|input_conditional_ec|input_ec_in": { + "id": "158df96eaa64fd08", + "src": "hda", + "uuid": "80995b8a-0c9b-4ef0-8ad6-07eb42b400d5" + }, + "rules|file": { + "id": "9b2f4e10cc6dd033", + "src": "hda", + "uuid": "5289c0a4-efb2-4b52-b8a0-a793e2f2eefe" + } + }, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + "output_collections": {}, + "outputs": { + "out_rules": { + "id": "36e3846a4c0fca27", + "src": "hda", + "uuid": "982bef6f-5b22-44b6-abd4-36a81896797b" + } + }, + "params": { + "__input_ext": "\"input\"", + "adv": "{\"compress\": false, \"diameters\": [\"2\", \"4\", \"6\", \"8\", \"10\", \"12\", \"14\", \"16\"], \"input_conditional_ec\": {\"__current_case__\": 1, \"input_ec_in\": {\"values\": [{\"id\": 6, \"src\": \"hda\"}]}, \"input_type\": \"in\"}, \"input_scores_file\": null}", + "chromInfo": "\"/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "dbkey": "\"?\"", + "rules": "{\"__current_case__\": 3, \"file\": {\"values\": [{\"id\": 5, \"src\": \"hda\"}]}, \"input_format\": \"csv\", \"type\": \"rules-file\"}" + }, + "state": "ok", + "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (in): ['1.1.1.202', '2.3.1.40', 'NOEC', '1.2.3', '2.4.1\\n']\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 31 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "stdout": "", + "tool_id": "rrparser", + "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (in): ['1.1.1.202', '2.3.1.40', 'NOEC', '1.2.3', '2.4.1\\n']\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 31 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "tool_stdout": "", + "update_time": "2025-04-02T13:19:40.770934", + "user_email": "planemo@galaxyproject.org", + "user_id": "9e4e5a4b3a855398" + }, + "status": "success", + "test_index": 3, + "time_seconds": 17.23330569267273, + "tool_id": "rrparser", + "tool_version": "2.7.0+galaxy2" + }, + "has_data": true, + "id": "rrparser-3" + }, + { + "data": { + "inputs": { + "adv|input_conditional_ec|input_ec_out": { + "id": "5a3f6d2aa5cbbf69", + "src": "hda" + }, + "adv|input_conditional_ec|input_type": "out", + "rules|file": { + "id": "20fb8cb0d7ee14e2", + "src": "hda" + }, + "rules|type": "rules-file" + }, + "job": { + "command_line": "python -m rrparser --rules_file '/tmp/tmpm3epclar/files/a/3/4/dataset_a348e61f-9252-4235-bd19-a9a9055b3ed9.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir \"${TMPDIR:-.}\" --outfile '/tmp/tmpm3epclar/job_working_directory/000/10/outputs/dataset_aa8ef57c-61dd-4229-a390-ac9db19b9df1.dat' --ecx '/tmp/tmpm3epclar/files/6/a/a/dataset_6aad8801-3891-438c-9a0d-8ae38e74ffc6.dat'", + "command_version": "", + "copied_from_job_id": null, + "create_time": "2025-04-02T13:19:51.381242", + "dependencies": [ + { + "cacheable": false, + "dependency_resolver": { + "auto_init": true, + "auto_install": true, + "can_uninstall_dependencies": true, + "ensure_channels": "conda-forge,bioconda", + "model_class": "CondaDependencyResolver", + "prefix": "/home/rkhaled/miniconda3", + "read_only": false, + "resolver_type": "conda", + "resolves_simple_dependencies": true, + "use_local": false, + "versionless": false + }, + "dependency_type": "conda", + "environment_path": "/home/rkhaled/miniconda3/envs/__rrparser@2.7.0", + "exact": true, + "model_class": "MergedCondaDependency", + "name": "rrparser", + "version": "2.7.0" + } + ], + "exit_code": 0, + "external_id": "177107", + "galaxy_version": "24.2", + "handler": null, + "history_id": "9b2f4e10cc6dd033", + "id": "dce39e11a9fe3b39", + "inputs": { + "adv|input_conditional_ec|input_ec_out": { + "id": "5a3f6d2aa5cbbf69", + "src": "hda", + "uuid": "6aad8801-3891-438c-9a0d-8ae38e74ffc6" + }, + "rules|file": { + "id": "20fb8cb0d7ee14e2", + "src": "hda", + "uuid": "a348e61f-9252-4235-bd19-a9a9055b3ed9" + } + }, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + "output_collections": {}, + "outputs": { + "out_rules": { + "id": "dce39e11a9fe3b39", + "src": "hda", + "uuid": "aa8ef57c-61dd-4229-a390-ac9db19b9df1" + } + }, + "params": { + "__input_ext": "\"input\"", + "adv": "{\"compress\": false, \"diameters\": [\"2\", \"4\", \"6\", \"8\", \"10\", \"12\", \"14\", \"16\"], \"input_conditional_ec\": {\"__current_case__\": 2, \"input_ec_out\": {\"values\": [{\"id\": 9, \"src\": \"hda\"}]}, \"input_type\": \"out\"}, \"input_scores_file\": null}", + "chromInfo": "\"/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "dbkey": "\"?\"", + "rules": "{\"__current_case__\": 3, \"file\": {\"values\": [{\"id\": 8, \"src\": \"hda\"}]}, \"input_format\": \"csv\", \"type\": \"rules-file\"}" + }, + "state": "ok", + "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): ['1.1.1.202', '2.3.1.40', 'NOEC', '1.2.3', '2.4.1\\n']\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 68 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "stdout": "", + "tool_id": "rrparser", + "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): ['1.1.1.202', '2.3.1.40', 'NOEC', '1.2.3', '2.4.1\\n']\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 68 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "tool_stdout": "", + "update_time": "2025-04-02T13:19:58.249593", + "user_email": "planemo@galaxyproject.org", + "user_id": "9e4e5a4b3a855398" + }, + "status": "success", + "test_index": 4, + "time_seconds": 17.527034759521484, + "tool_id": "rrparser", + "tool_version": "2.7.0+galaxy2" + }, + "has_data": true, + "id": "rrparser-4" + }, + { + "data": { + "inputs": { + "adv|input_scores_file": { + "id": "e518de1807107326", + "src": "hda" + }, + "rules|file": { + "id": "1ecde2b521ddcb43", + "src": "hda" + }, + "rules|type": "rules-file" + }, + "job": { + "command_line": "python -m rrparser --rules_file '/tmp/tmpm3epclar/files/9/c/c/dataset_9cc4cc4e-4aa9-4f11-ba74-f94f9ff8bd58.dat' --input-format 'csv' --diameters '2,4,6,8,10,12,14,16' --output-format csv --rules-dir \"${TMPDIR:-.}\" --outfile '/tmp/tmpm3epclar/job_working_directory/000/13/outputs/dataset_7b814b69-02aa-4a6a-87e9-df3c7506f8e0.dat' --scores '/tmp/tmpm3epclar/files/9/c/9/dataset_9c94b8d9-170b-42d3-be35-8ec09d2f651c.dat'", + "command_version": "", + "copied_from_job_id": null, + "create_time": "2025-04-02T13:20:08.972566", + "dependencies": [ + { + "cacheable": false, + "dependency_resolver": { + "auto_init": true, + "auto_install": true, + "can_uninstall_dependencies": true, + "ensure_channels": "conda-forge,bioconda", + "model_class": "CondaDependencyResolver", + "prefix": "/home/rkhaled/miniconda3", + "read_only": false, + "resolver_type": "conda", + "resolves_simple_dependencies": true, + "use_local": false, + "versionless": false + }, + "dependency_type": "conda", + "environment_path": "/home/rkhaled/miniconda3/envs/__rrparser@2.7.0", + "exact": true, + "model_class": "MergedCondaDependency", + "name": "rrparser", + "version": "2.7.0" + } + ], + "exit_code": 0, + "external_id": "177372", + "galaxy_version": "24.2", + "handler": null, + "history_id": "158df96eaa64fd08", + "id": "bec2ef2bb04a8edc", + "inputs": { + "adv|input_scores_file": { + "id": "e518de1807107326", + "src": "hda", + "uuid": "9c94b8d9-170b-42d3-be35-8ec09d2f651c" + }, + "rules|file": { + "id": "1ecde2b521ddcb43", + "src": "hda", + "uuid": "9cc4cc4e-4aa9-4f11-ba74-f94f9ff8bd58" + } + }, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + "output_collections": {}, + "outputs": { + "out_rules": { + "id": "bec2ef2bb04a8edc", + "src": "hda", + "uuid": "7b814b69-02aa-4a6a-87e9-df3c7506f8e0" + } + }, + "params": { + "__input_ext": "\"input\"", + "adv": "{\"compress\": false, \"diameters\": [\"2\", \"4\", \"6\", \"8\", \"10\", \"12\", \"14\", \"16\"], \"input_conditional_ec\": {\"__current_case__\": 0, \"input_type\": \"no\"}, \"input_scores_file\": {\"values\": [{\"id\": 12, \"src\": \"hda\"}]}}", + "chromInfo": "\"/tmp/tmpm3epclar/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "dbkey": "\"?\"", + "rules": "{\"__current_case__\": 3, \"file\": {\"values\": [{\"id\": 11, \"src\": \"hda\"}]}, \"input_format\": \"csv\", \"type\": \"rules-file\"}" + }, + "state": "ok", + "stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 99 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[33mRule IDs {'foo'} found in scores file but not in results. Its score will not be used.\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "stdout": "", + "tool_id": "rrparser", + "tool_stderr": "\u001b[32m\nrrparser 2.6.0\n\u001b[0m\n\u001b[32mFiltering rules:\u001b[0m\n\u001b[32m -> EC numbers (not in): []\u001b[0m\n\u001b[32m -> Diameters: [2, 4, 6, 8, 10, 12, 14, 16]\u001b[0m\n\u001b[32m -> Rule types: all\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[32m=> 99 rules found\u001b[0m\n\u001b[32m\u001b[0m\n\u001b[33mRule IDs {'foo'} found in scores file but not in results. Its score will not be used.\u001b[0m\n\u001b[32mWriting results...\u001b[0m\n", + "tool_stdout": "", + "update_time": "2025-04-02T13:20:15.699056", + "user_email": "planemo@galaxyproject.org", + "user_id": "9e4e5a4b3a855398" + }, + "status": "success", + "test_index": 5, + "time_seconds": 17.1466064453125, + "tool_id": "rrparser", + "tool_version": "2.7.0+galaxy2" + }, + "has_data": true, + "id": "rrparser-5" + } + ], "version": "0.1" } \ No newline at end of file
--- a/rrparser.xml Wed Apr 02 12:07:00 2025 +0000 +++ b/rrparser.xml Wed Apr 02 13:24:04 2025 +0000 @@ -1,4 +1,4 @@ -<tool id="rrparser" name="RRules Parser" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="24.09" license="MIT"> +<tool id="rrparser" name="RRules Parser" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="24.2" license="MIT"> <description>Retrieve the reaction rules from RetroRules</description> <macros> <token name="@VERSION_SUFFIX@">2</token>