Mercurial > repos > tduigou > icfree_instructor

annotate instructor.xml @ 10:6b5c22fc9388 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/brsynth/icfree-ml commit 36522574cb42262281f2f6501921cc4b534702bb
author tduigou
date Wed, 15 Mar 2023 11:06:16 +0000
parents eac0d2bd8dd8
children 401d55846cbf
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
1 <tool id="icfree_instructor" name="iCFree instructor" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" license="@LICENCE@">
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
2 <description>Generates a list of Echo-compatible instructions to prepare samples</description>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
3 <macros>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
4 <import>macros.xml</import>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
5 </macros>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
6 <expand macro="requirements"/>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
7 <expand macro="stdio"/>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
8 <command detect_errors="exit_code"><![CDATA[
7
6f8e7e811333 planemo upload for repository https://github.com/brsynth/icfree-ml commit 394ca2ac7adcf41f39deb35433fc81b33747041c
tduigou
parents: 6
diff changeset
9 mkdir json tsv &&
5
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
10 #set sps = []
6
df5b3f40c0b6 planemo upload for repository https://github.com/brsynth/icfree-ml commit bb700d24e25b280f75f17f0a25f91062688cbad7
tduigou
parents: 5
diff changeset
11 #for $x in $source_plates:
8
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
12 #set $fname = str($x.element_identifier) + '.json'
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
13 ln -sfn '$x' '$fname' &&
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
14 #silent sps.append($fname)
5
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
15 #end for
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
16 #set s_sps = '" "'.join(sps)
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
17 #set sws = []
6
df5b3f40c0b6 planemo upload for repository https://github.com/brsynth/icfree-ml commit bb700d24e25b280f75f17f0a25f91062688cbad7
tduigou
parents: 5
diff changeset
18 #for $x in $source_wells:
8
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
19 #set $fname = str($x.element_identifier) + '.tsv'
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
20 ln -sfn '$x' '$fname' &&
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
21 #silent sws.append($fname)
5
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
22 #end for
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
23 #set s_sws = '" "'.join(sws)
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
24 #set dps = []
6
df5b3f40c0b6 planemo upload for repository https://github.com/brsynth/icfree-ml commit bb700d24e25b280f75f17f0a25f91062688cbad7
tduigou
parents: 5
diff changeset
25 #for $x in $dest_plates:
8
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
26 #set $fname = str($x.element_identifier) + '.json'
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
27 ln -sfn '$x' '$fname' &&
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
28 #silent dps.append($fname)
5
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
29 #end for
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
30 #set s_dps = '" "'.join(dps)
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
31 #set dws = []
6
df5b3f40c0b6 planemo upload for repository https://github.com/brsynth/icfree-ml commit bb700d24e25b280f75f17f0a25f91062688cbad7
tduigou
parents: 5
diff changeset
32 #for $x in $dest_wells:
8
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
33 #set $fname = str($x.element_identifier) + '.tsv'
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
34 ln -sfn '$x' '$fname' &&
c8bd090fa47f planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
tduigou
parents: 7
diff changeset
35 #silent dws.append($fname)
5
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
36 #end for
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
37 #set s_dws = '" "'.join(dws)
0
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
38 python -m icfree.instructor
5
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
39 --source_plates '$s_sps'
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
40 --source_wells '$s_sws'
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
41 --dest_plates '$s_dps'
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
42 --dest_wells '$s_dws'
4
fba5810f3946 planemo upload for repository https://github.com/brsynth/icfree-ml commit 79b4751f34792a1a346ada38f7b6f64571dd51e9
tduigou
parents: 1
diff changeset
43 --output-folder '.' &&
9
eac0d2bd8dd8 planemo upload for repository https://github.com/brsynth/icfree-ml commit 85914678915691d3ec8f0477f8bc7bcfa8518590
tduigou
parents: 8
diff changeset
44 mv instructions.csv '$output_instruction' &&
10
6b5c22fc9388 planemo upload for repository https://github.com/brsynth/icfree-ml commit 36522574cb42262281f2f6501921cc4b534702bb
tduigou
parents: 9
diff changeset
45 #if not s.path.isfile('volume_warning.tsv')
9
eac0d2bd8dd8 planemo upload for repository https://github.com/brsynth/icfree-ml commit 85914678915691d3ec8f0477f8bc7bcfa8518590
tduigou
parents: 8
diff changeset
46 touch volume_warning.tsv &&
eac0d2bd8dd8 planemo upload for repository https://github.com/brsynth/icfree-ml commit 85914678915691d3ec8f0477f8bc7bcfa8518590
tduigou
parents: 8
diff changeset
47 #end if
eac0d2bd8dd8 planemo upload for repository https://github.com/brsynth/icfree-ml commit 85914678915691d3ec8f0477f8bc7bcfa8518590
tduigou
parents: 8
diff changeset
48 mv volume_warning.tsv '$output_warning'
0
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
49 ]]></command>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
50 <inputs>
5
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
51 <param name="source_plates" type="data_collection" collection_type="list" format="json" label="Source plates information (json)" />
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
52 <param name="source_wells" type="data_collection" collection_type="list" format="tabular" label="Source wells information (tsv)" />
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
53 <param name="dest_plates" type="data_collection" collection_type="list" format="json" label="Destination plates information (json)" />
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
54 <param name="dest_wells" type="data_collection" collection_type="list" format="tabular" label="Destination wells information (tsv)" />
0
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
55 </inputs>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
56 <outputs>
5
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
57 <data name="output_warning" format="tsv" label="${tool.name} - Warning" />
4
fba5810f3946 planemo upload for repository https://github.com/brsynth/icfree-ml commit 79b4751f34792a1a346ada38f7b6f64571dd51e9
tduigou
parents: 1
diff changeset
58 <data name="output_instruction" format="csv" label="${tool.name} - Instruction" />
0
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
59 </outputs>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
60 <tests>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
61 <test>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
62 <!-- test 1: check if identical outputs are produced with default parameters -->
5
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
63 <param name="source_plates">
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
64 <collection type="list">
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
65 <element name="plates_generator_source_plate_1" value="plates_generator_source_plate_1.test-1.json" />
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
66 </collection>
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
67 </param>
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
68 <param name="source_wells">
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
69 <collection type="list">
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
70 <element name="plates_generator_source_plate_1.test-1.tsv" value="plates_generator_source_plate_1.test-1.tsv" />
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
71 </collection>
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
72 </param>
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
73 <param name="dest_plates">
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
74 <collection type="list">
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
75 <element name="plates_generator_destination_plate_1.test-1.json" value="plates_generator_destination_plate_1.test-1.json" />
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
76 </collection>
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
77 </param>
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
78 <param name="dest_wells">
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
79 <collection type="list">
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
80 <element name="plates_generator_destination_plate_1.test-1.tsv" value="plates_generator_destination_plate_1.test-1.tsv" />
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
81 </collection>
190889521a9e planemo upload for repository https://github.com/brsynth/icfree-ml commit 5f2c17e82747f20abcdf1f11dee4b5bd414295ef
tduigou
parents: 4
diff changeset
82 </param>
4
fba5810f3946 planemo upload for repository https://github.com/brsynth/icfree-ml commit 79b4751f34792a1a346ada38f7b6f64571dd51e9
tduigou
parents: 1
diff changeset
83 <output name="output_warning" ftype="tabular">
fba5810f3946 planemo upload for repository https://github.com/brsynth/icfree-ml commit 79b4751f34792a1a346ada38f7b6f64571dd51e9
tduigou
parents: 1
diff changeset
84 <assert_contents>
fba5810f3946 planemo upload for repository https://github.com/brsynth/icfree-ml commit 79b4751f34792a1a346ada38f7b6f64571dd51e9
tduigou
parents: 1
diff changeset
85 <has_n_lines n="12"/>
fba5810f3946 planemo upload for repository https://github.com/brsynth/icfree-ml commit 79b4751f34792a1a346ada38f7b6f64571dd51e9
tduigou
parents: 1
diff changeset
86 <has_line_matching expression="^Parameter\tMin\tMax\tPlate$"/>
fba5810f3946 planemo upload for repository https://github.com/brsynth/icfree-ml commit 79b4751f34792a1a346ada38f7b6f64571dd51e9
tduigou
parents: 1
diff changeset
87 </assert_contents>
0
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
88 </output>
4
fba5810f3946 planemo upload for repository https://github.com/brsynth/icfree-ml commit 79b4751f34792a1a346ada38f7b6f64571dd51e9
tduigou
parents: 1
diff changeset
89 <output name="output_instruction" file="instructor_instructions.csv" ftype="csv" compare="diff" />
0
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
90 </test>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
91 </tests>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
92 <help><![CDATA[
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
93 Instructor
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
94 ==========
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
95
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
96 The module generates a list of instructions to perform the experiment.
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
97
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
98 Input
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
99 -----
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
100 Required:
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
101 * **Source plates file**: description of the source plates (source well name, source well volume...) (JSON format)
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
102 * **Destination plates file**: description of the destination plates (destination well name, destination well volume...) (JSON format)
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
103
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
104 Advanced options:
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
105 -----------------
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
106 * **Robot name**: name of the robot to generate instructions for (default: "echo")
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
107
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
108 Output
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
109 ------
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
110 * **instructions**: contains the instructions to perform the experiment
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
111 * **volumes_warning**: contains the volumes that may cause issues with the chosen robot
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
112 ]]></help>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
113 <expand macro="creator"/>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
114 <expand macro="citation"/>
f60f2f6ec0cc planemo upload for repository https://github.com/brsynth/icfree-ml commit d87d4a4d7c894f2d884a71a2acc35f93bc5bbe4b
tduigou
parents:
diff changeset
115 </tool>