Mercurial > repos > tduigou > icfree_instructor
diff instructor.xml @ 7:6f8e7e811333 draft
planemo upload for repository https://github.com/brsynth/icfree-ml commit 394ca2ac7adcf41f39deb35433fc81b33747041c
| author | tduigou |
|---|---|
| date | Wed, 15 Mar 2023 10:26:46 +0000 |
| parents | df5b3f40c0b6 |
| children | c8bd090fa47f |
line wrap: on
line diff
--- a/instructor.xml Wed Mar 15 10:06:51 2023 +0000 +++ b/instructor.xml Wed Mar 15 10:26:46 2023 +0000 @@ -6,28 +6,29 @@ <expand macro="requirements"/> <expand macro="stdio"/> <command detect_errors="exit_code"><![CDATA[ + mkdir json tsv && #set sps = [] #for $x in $source_plates: - ln -sfn '$x' '$x.element_identifier' && - #silent sps.append(str($x.element_identifier)) + ln -sfn '$x' 'json/$x.element_identifier' && + #silent sps.append('json/' + str($x.element_identifier)) #end for #set s_sps = '" "'.join(sps) #set sws = [] #for $x in $source_wells: - ln -sfn '$x' '$x.element_identifier' && - #silent sws.append(str($x.element_identifier)) + ln -sfn '$x' 'tsv/$x.element_identifier' && + #silent sws.append('tsv/' + str($x.element_identifier)) #end for #set s_sws = '" "'.join(sws) #set dps = [] #for $x in $dest_plates: - ln -sfn '$x' '$x.element_identifier' && - #silent dps.append(str($x.element_identifier)) + ln -sfn '$x' 'json/$x.element_identifier' && + #silent dps.append('json/' + str($x.element_identifier)) #end for #set s_dps = '" "'.join(dps) #set dws = [] #for $x in $dest_wells: - ln -sfn '$x' '$x.element_identifier' && - #silent dws.append(str($x.element_identifier)) + ln -sfn '$x' 'tsv/$x.element_identifier' && + #silent dws.append('tsv/' + str($x.element_identifier)) #end for #set s_dws = '" "'.join(dws) python -m icfree.instructor