Mercurial > repos > tduigou > icfree_instructor
diff instructor.xml @ 8:c8bd090fa47f draft
planemo upload for repository https://github.com/brsynth/icfree-ml commit 1d40e70482d76c2f672071584b43a358aa5a0de7
| author | tduigou |
|---|---|
| date | Wed, 15 Mar 2023 10:42:44 +0000 |
| parents | 6f8e7e811333 |
| children | eac0d2bd8dd8 |
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--- a/instructor.xml Wed Mar 15 10:26:46 2023 +0000 +++ b/instructor.xml Wed Mar 15 10:42:44 2023 +0000 @@ -9,26 +9,30 @@ mkdir json tsv && #set sps = [] #for $x in $source_plates: - ln -sfn '$x' 'json/$x.element_identifier' && - #silent sps.append('json/' + str($x.element_identifier)) + #set $fname = str($x.element_identifier) + '.json' + ln -sfn '$x' '$fname' && + #silent sps.append($fname) #end for #set s_sps = '" "'.join(sps) #set sws = [] #for $x in $source_wells: - ln -sfn '$x' 'tsv/$x.element_identifier' && - #silent sws.append('tsv/' + str($x.element_identifier)) + #set $fname = str($x.element_identifier) + '.tsv' + ln -sfn '$x' '$fname' && + #silent sws.append($fname) #end for #set s_sws = '" "'.join(sws) #set dps = [] #for $x in $dest_plates: - ln -sfn '$x' 'json/$x.element_identifier' && - #silent dps.append('json/' + str($x.element_identifier)) + #set $fname = str($x.element_identifier) + '.json' + ln -sfn '$x' '$fname' && + #silent dps.append($fname) #end for #set s_dps = '" "'.join(dps) #set dws = [] #for $x in $dest_wells: - ln -sfn '$x' 'tsv/$x.element_identifier' && - #silent dws.append('tsv/' + str($x.element_identifier)) + #set $fname = str($x.element_identifier) + '.tsv' + ln -sfn '$x' '$fname' && + #silent dws.append($fname) #end for #set s_dws = '" "'.join(dws) python -m icfree.instructor