Mercurial > repos > recetox > retip_train

annotate retip_train.xml @ 1:9bd6a0a00b0b draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 182a5eaf751237e48ce1fcb5d93a4a7c507ab55c"
author recetox
date Fri, 02 Oct 2020 18:08:53 +0000
parents baa7c8768036
children 6462a0ac9c29
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baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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1 <tool id="retip_train" name="Retip training" version="@TOOL_VERSION@+galaxy0">
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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2 <description>the Keras model to predict retention times</description>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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3 <macros>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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4 <import>macros.xml</import>
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5 </macros>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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6 <expand macro="requirements"/>
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7 <command detect_errors="exit_code"><![CDATA[
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8 /run.sh trainKeras.R '$descr_train' 'model.hdf5'
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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9 ]]>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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10 </command>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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11 <inputs>
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12 <param name="descr_train" label="Select Descriptors.Feather Dataset" type="data" format="h5"
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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13 optional="false"/>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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14 </inputs>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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15 <outputs>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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16 <data format="h5" name="output1" label="Model.hdf5 Dataset" from_work_dir="model.hdf5"/>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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17 </outputs>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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18 <tests>
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19 <test expect_num_outputs="1">
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20 <param name="descr_train" value="descriptors.feather"/>
1
9bd6a0a00b0b "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 182a5eaf751237e48ce1fcb5d93a4a7c507ab55c"
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21 <output name="output1" file="model.hdf5" ftype="h5" compare="sim_size" delta="1000"/>
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baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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22 </test>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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23 </tests>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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24 <help><![CDATA[
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25 .. class:: infomark
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26
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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27 This tool uses ALMA mater: Advanced Learning Machine Algorithms to **train models**.
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28
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29 @HELP@
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30 ]]>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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31 </help>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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32 <expand macro="citations"/>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
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33 </tool>