Mercurial > repos > recetox > retip_train

view retip_train.xml @ 2:6462a0ac9c29 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 9f9b92c89606c662e540573375241a5b99cefe80"
author recetox
date Mon, 05 Oct 2020 13:56:24 +0000
parents 9bd6a0a00b0b
children 9012a9dba1db
line wrap: on
line source

<tool id="retip_train" name="Retip training" version="@TOOL_VERSION@+galaxy1">
    <description>the Keras model to predict retention times</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="exit_code"><![CDATA[
            /run.sh trainKeras.R '$descr_train' 'model.h5'
      ]]>
    </command>
    <inputs>
        <param name="descr_train" label="Select Descriptors.h5 Dataset" type="data" format="h5"
               optional="false"/>
    </inputs>
    <outputs>
        <data format="h5" name="output1" label="Model.h5 Dataset" from_work_dir="model.h5"/>
    </outputs>
    <tests>
        <test expect_num_outputs="1">
            <param name="descr_train" value="descriptors.h5"/>
            <output name="output1" file="model.h5" ftype="h5" compare="sim_size" delta="1000"/>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark

This tool uses ALMA mater: Advanced Learning Machine Algorithms to **train models**.

@HELP@
        ]]>
    </help>
    <expand macro="citations"/>
</tool>