Mercurial > repos > recetox > retip_train

diff retip_train.xml @ 0:baa7c8768036 draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
author recetox
date Wed, 30 Sep 2020 09:57:12 +0000
parents
children 9bd6a0a00b0b
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/retip_train.xml	Wed Sep 30 09:57:12 2020 +0000
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+<tool id="retip_train" name="Retip training" version="@TOOL_VERSION@+galaxy0">
+    <description>the Keras model to predict retention times</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <command detect_errors="exit_code"><![CDATA[
+            /run.sh trainKeras.R '$descr_train' 'model.hdf5'
+      ]]>
+    </command>
+    <inputs>
+        <param name="descr_train" label="Select Descriptors.Feather Dataset" type="data" format="h5"
+               optional="false"/>
+    </inputs>
+    <outputs>
+        <data format="h5" name="output1" label="Model.hdf5 Dataset" from_work_dir="model.hdf5"/>
+    </outputs>
+    <tests>
+        <test expect_num_outputs="1">
+            <param name="descr_train" value="descriptors.feather"/>
+            <output name="output1" file="model.hdf5" ftype="h5" lines_diff="2"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+.. class:: infomark
+
+This tool uses ALMA mater: Advanced Learning Machine Algorithms to **train models**.
+
+@HELP@
+        ]]>
+    </help>
+    <expand macro="citations"/>
+</tool>