Mercurial > repos > rdvelazquez > hyphy_fubar

annotate macros.xml @ 7:b19b7712ab0a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'6da8a2296bb256e47852690cf2221a7c943d8adc\n'-dirty
author rdvelazquez
date Tue, 04 Dec 2018 10:38:21 -0500
parents c21335f5d583
children 55dd19bffb00
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a52fcdeacf3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'32e39857cb09a483e607ddd223f3783bff328cb2\n'-dirty
rdvelazquez
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1 <?xml version="1.0"?>
a52fcdeacf3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'32e39857cb09a483e607ddd223f3783bff328cb2\n'-dirty
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2 <macros>
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3 <xml name="citations">
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4 <citations>
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5 <citation type="doi">10.1093/bioinformatics/bti079</citation>
c21335f5d583 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
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6 <yield/>
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7 </citations>
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8 </xml>
c21335f5d583 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
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9 <token name="@VERSION@">2.3.14</token>
c21335f5d583 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
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10 <xml name="requirements">
c21335f5d583 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
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11 <requirements>
c21335f5d583 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
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12 <requirement type="package" version="@VERSION@">
c21335f5d583 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
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13 hyphy</requirement>
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14 <yield/>
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15 </requirements>
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16 </xml>
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17 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
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18 export HYPHY_PATH=`dirname \$HYPHY` &&
fa2236bc5ab2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'bff24ad0eccc4083de076adc029c5c3ac50e2852\n'-dirty
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19 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
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20 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token>
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b19b7712ab0a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'6da8a2296bb256e47852690cf2221a7c943d8adc\n'-dirty
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21 <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHYMPI=`which HYPHYMPI` &&
b19b7712ab0a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'6da8a2296bb256e47852690cf2221a7c943d8adc\n'-dirty
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22 export HYPHYMPI_PATH=`dirname \$HYPHYMPI` &&
b19b7712ab0a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'6da8a2296bb256e47852690cf2221a7c943d8adc\n'-dirty
rdvelazquez
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23 export HYPHYMPI_LIB=`readlink -f \$HYPHYMPI_PATH/../lib/hyphy` &&
b19b7712ab0a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'6da8a2296bb256e47852690cf2221a7c943d8adc\n'-dirty
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24 cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHYMPI_LIB ]]></token>
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25 </macros>