Mercurial > repos > rdvelazquez > hyphy_fubar

annotate macros.xml @ 5:203597c4875e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
author rdvelazquez
date Mon, 03 Dec 2018 14:55:19 -0500
parents fa2236bc5ab2
children c21335f5d583
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a52fcdeacf3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'32e39857cb09a483e607ddd223f3783bff328cb2\n'-dirty
rdvelazquez
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1 <?xml version="1.0"?>
a52fcdeacf3d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'32e39857cb09a483e607ddd223f3783bff328cb2\n'-dirty
rdvelazquez
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2 <macros>
5
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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3 <xml name="citations">
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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4 <citations>
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rdvelazquez
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5 <citation type="doi">10.1093/bioinformatics/bti079</citation>
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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6 <yield />
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
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7 </citations>
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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8 </xml>
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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9 <token name="@VERSION@">2.3.12</token>
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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10 <xml name="requirements">
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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11 <requirements>
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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12 <requirement type="package" version="@VERSION@">hyphy</requirement>
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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13 <yield />
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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14 </requirements>
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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15 </xml>
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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16 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
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fa2236bc5ab2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'bff24ad0eccc4083de076adc029c5c3ac50e2852\n'-dirty
rdvelazquez
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17 export HYPHY_PATH=`dirname \$HYPHY` &&
fa2236bc5ab2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'bff24ad0eccc4083de076adc029c5c3ac50e2852\n'-dirty
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18 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
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203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
rdvelazquez
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19 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]>
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
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20 </token>
203597c4875e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'05321082a670b6d41ae9f329b2b54227eecac6ad\n'-dirty
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21 </macros>