Mercurial > repos > rdvelazquez > hyphy_fubar

diff macros.xml @ 1:fa2236bc5ab2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'bff24ad0eccc4083de076adc029c5c3ac50e2852\n'-dirty
author rdvelazquez
date Sun, 18 Nov 2018 22:58:53 -0500
parents a52fcdeacf3d
children 203597c4875e
line wrap: on
line diff
--- a/macros.xml	Tue Jun 12 13:59:32 2018 -0400
+++ b/macros.xml	Sun Nov 18 22:58:53 2018 -0500
@@ -1,15 +1,21 @@
 <?xml version="1.0"?>
 <macros>
-    <xml name="citations">
-        <citations>
-            <citation type="doi">10.1093/bioinformatics/bti079</citation>
-        </citations>
-    </xml>
-    <token name="@VERSION@">2.3.12</token>
-    <xml name="requirements">
-        <requirements>
-            <requirement type="package" version="@VERSION@">hyphy</requirement>
-            <yield />
-        </requirements>
-    </xml>
-</macros>
\ No newline at end of file
+  <xml name="citations">
+    <citations>
+      <citation type="doi">10.1093/bioinformatics/bti079</citation>
+      <yield/>
+    </citations>
+  </xml>
+  <token name="@VERSION@">2.3.14</token>
+  <xml name="requirements">
+    <requirements>
+      <requirement type="package" version="@VERSION@">
+      hyphy</requirement>
+      <yield/>
+    </requirements>
+  </xml>
+  <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
+export HYPHY_PATH=`dirname \$HYPHY` &&
+export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
+cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token>
+</macros>