Mercurial > repos > mvdbeek > package_ngs_1_1_3

annotate tool_dependencies.xml @ 3:33b3938a8c2a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 09:53:56 -0400
parents ec5356060e00
children 35f562227199
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
1 <?xml version="1.0"?>
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
2 <tool_dependency>
1
d8ab6092efeb planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 0
diff changeset
3 <!-- <package name="ncbi_vdb" version="2.5.2">
d8ab6092efeb planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 0
diff changeset
4 <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" />
0
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
5 </package>
1
d8ab6092efeb planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 0
diff changeset
6 -->
3
33b3938a8c2a planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 2
diff changeset
7 <package name="ngs" version="1.1.3">
33b3938a8c2a planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 2
diff changeset
8 <install version="1.0">
33b3938a8c2a planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 2
diff changeset
9 <actions>
2
ec5356060e00 planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 1
diff changeset
10 <action type="setup_perl_environment">
3
33b3938a8c2a planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 2
diff changeset
11 <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
33b3938a8c2a planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 2
diff changeset
12 <package name="perl" version="5.18.1" />
2
ec5356060e00 planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 1
diff changeset
13 </repository>
ec5356060e00 planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 1
diff changeset
14 <package>File::Copy</package>
ec5356060e00 planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 1
diff changeset
15 <package>File::Spec</package>
ec5356060e00 planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 1
diff changeset
16 <package>File::Copy::Recursive</package>
ec5356060e00 planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 1
diff changeset
17 </action>
3
33b3938a8c2a planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 2
diff changeset
18 <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
1
d8ab6092efeb planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 0
diff changeset
19 <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
0
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
20 <action type="set_environment">
3
33b3938a8c2a planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents: 2
diff changeset
21 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
0
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
22 </action>
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
23 </actions>
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
24 </install>
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
25 <readme>
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
26 ncbi-ngs, required for sra-tools package.
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
27
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
28 </readme>
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
29 </package>
f090c319428b planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
mvdbeek
parents:
diff changeset
30 </tool_dependency>