Mercurial > repos > mvdbeek > package_ngs_1_1_3

comparison tool_dependencies.xml @ 3:33b3938a8c2a draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 09:53:56 -0400
parents ec5356060e00
children 35f562227199
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2:ec5356060e00 3:33b3938a8c2a
2 <tool_dependency> 2 <tool_dependency>
3 <!-- <package name="ncbi_vdb" version="2.5.2"> 3 <!-- <package name="ncbi_vdb" version="2.5.2">
4 <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" /> 4 <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" />
5 </package> 5 </package>
6 --> 6 -->
7 <package name="ngs" version="1.1.3">
8 <install version="1.0">
9 <actions>
7 <action type="setup_perl_environment"> 10 <action type="setup_perl_environment">
8 <repository name="package_perl_5_18" owner="bgruening"><package name="perl" version="5.18.1" /> 11 <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
12 <package name="perl" version="5.18.1" />
9 </repository> 13 </repository>
10 <package>File::Copy</package> 14 <package>File::Copy</package>
11 <package>File::Spec</package> 15 <package>File::Spec</package>
12 <package>File::Copy::Recursive</package> 16 <package>File::Copy::Recursive</package>
13 </action> 17 </action>
14 <package name="ngs" version="1.1.3"> 18 <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
15 <install version="1.0">
16 <actions>
17 <action type="download_by_url" target_filename="ngs-1.1.3.tar.gz">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
18 <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action> 19 <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
19 <action type="set_environment"> 20 <action type="set_environment">
20 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 21 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
21 </action> 22 </action>
22 </actions> 23 </actions>
23 </install> 24 </install>
24 <readme> 25 <readme>
25 ncbi-ngs, required for sra-tools package. 26 ncbi-ngs, required for sra-tools package.